Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-34/megassr/results/hub_GCA_902807425.1/fasta/hub_GCA_902807425.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           2401701
Total number of identified SSRs:                 11
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AC	-	-	-	1	1
ATA	-	-	1		1
TGG	-	-	1		1
ATGGC	1				1
AAGCAG	1				1
CATCTG	1				1
CCGGTG			1		1
GAGCGC	1				1
GCAGCT	1				1
GCCGAG	1				1
TGTTGG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AAT/ATT	-	-	1		1
ACC/GGT	-	-	1		1
ATGCC/ATGGC	1				1
AACACC/GGTGTT	1				1
AAGCAG/CTGCTT	1				1
ACCGGC/CCGGTG			1		1
AGATGC/ATCTGC	1				1
AGCGCG/CGCGCT	1				1
AGCTGC/AGCTGC	1				1
AGGCCG/CCTCGG	1				1
