Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-33/megassr/results/hub_GCA_902807385.1/fasta/hub_GCA_902807385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              41
Total size of examined sequences (bp):           2435273
Total number of identified SSRs:                 11
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
ATA	-	-	1	1
CTG	-	-	1	1
TGG	-	-	1	1
ATGGC	1			1
AAGCAG	1			1
CATCTG	1			1
CCGGTG			1	1
GAGCGC	1			1
GCAGCT	1			1
GCCGAG	1			1
TGTTGG	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAT/ATT	-	-	1	1
ACC/GGT	-	-	1	1
AGC/CTG	-	-	1	1
ATGCC/ATGGC	1			1
AACACC/GGTGTT	1			1
AAGCAG/CTGCTT	1			1
ACCGGC/CCGGTG			1	1
AGATGC/ATCTGC	1			1
AGCGCG/CGCGCT	1			1
AGCTGC/AGCTGC	1			1
AGGCCG/CCTCGG	1			1
