Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_900233955.1/fasta/hub_GCA_900233955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              109
Total size of examined sequences (bp):           838703
Total number of identified SSRs:                 95
Number of SSR containing sequences:              62
Number of sequences containing more than 1 SSR:  24
Number of SSRs present in compound formation:    8


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	35
3	21
4	3
5	23
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		2	1	4
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1					1
AC	-	-	-	2	1																		3
AG	-	-	-	3	2																		5
AT	-	-	-	2	1	2	1	2		1													9
CA	-	-	-	1							1												2
CT	-	-	-		1																		1
GA	-	-	-	4		1																	5
TA	-	-	-	2	3					1													6
TC	-	-	-	2		1																	3
TG	-	-	-		1																		1
AAG	-	-	1																				1
AGA	-	-	1																				1
ATC	-	-	1																				1
ATG	-	-	1																				1
CAC	-	-	1																				1
CAT	-	-	1																				1
CTT	-	-	1	2	1																		4
GAA	-	-	4						1														5
TCA	-	-	1																				1
TCT	-	-	3																				3
TTA	-	-	1																				1
TTC	-	-	1																				1
ATCA	-	1																					1
GAAA	-	1																					1
TATG	-	1																					1
AAAAC	2																						2
AAAAT	1	1																					2
AAACA	1																						1
AAATT	1																						1
AACGG	1																						1
AAGAA	1																						1
ACACA	1																						1
ATAAA	1																						1
ATGAA	1																						1
ATTTT	2																						2
CCGAA	1																						1
CTTTT	1																						1
TTAAT	1																						1
TTCGG	1																						1
TTTAA	1																						1
TTTGC	1																						1
TTTGG	1																						1
TTTTA	1																						1
TTTTG	2																						2
ACAAAA	1																						1
ATTGCT	1																						1
CATCTT	1																						1
TATTTT	1																						1
TCATGA	1																						1
TTGTTT		1																					1
TTTTTC	1																						1
TTTTTG	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1		2	1	5
AC/GT	-	-	-	3	2						1												6
AG/CT	-	-	-	9	3	2																	14
AT/AT	-	-	-	4	4	2	1	2		2													15
AAG/CTT	-	-	11	2	1				1														15
AAT/ATT	-	-	1																				1
ACC/GGT	-	-	1																				1
ATC/ATG	-	-	4																				4
AAAG/CTTT	-	1																					1
AATC/ATTG	-	1																					1
ACAT/ATGT	-	1																					1
AAAAC/GTTTT	5																						5
AAAAG/CTTTT	2																						2
AAAAT/ATTTT	5	1																					6
AAACC/GGTTT	1																						1
AAAGC/CTTTG	1																						1
AAATG/ATTTC	1																						1
AAATT/AATTT	3																						3
AACAC/GTGTT	1																						1
AACCG/CGGTT	2																						2
AACGG/CCGTT	1																						1
AAAAAC/GTTTTT	2	1																					3
AAAAAG/CTTTTT	1																						1
AAAAAT/ATTTTT	1																						1
AAGATG/ATCTTC	1																						1
AATAGC/ATTGCT	1																						1
ATCATG/ATCATG	1																						1
