Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-23/megassr/results/hub_GCA_061414235.1/fasta/hub_GCA_061414235.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              117
Total size of examined sequences (bp):           5360918
Total number of identified SSRs:                 14
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	1
5	1
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	1					1
TA	-	-	-		1				1
CGG	-	-	1						1
GCT	-	-	1						1
GGCT	-	1							1
CGCTG	1								1
ACCATG	1								1
AGAAAA	1								1
AGTACC	1								1
ATATTG								1	1
CAGACG	1								1
CGACTT	1								1
GATACC		1							1
GGTGCA		1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-		1				1
CG/CG	-	-	-	1					1
AGC/CTG	-	-	1						1
CCG/CGG	-	-	1						1
AGCC/CTGG	-	1							1
AGCGC/CGCTG	1								1
AAAAAG/CTTTTT	1								1
AAGTCG/ACTTCG	1								1
AATATC/ATATTG								1	1
ACCAGT/ACTGGT	1								1
ACCATG/ATGGTC	1								1
ACCGAT/ATCGGT		1							1
ACCTGC/AGGTGC		1							1
ACGCAG/CGTCTG	1								1
