Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-24/megassr/results/hub_GCA_060799495.1/fasta/hub_GCA_060799495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              93
Total size of examined sequences (bp):           5585636
Total number of identified SSRs:                 39
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	18
5	9
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-	1					1
CG	-	-	-	2	1				3
GC	-	-	-	1					1
CAG	-	-	1						1
CCA	-	-	1						1
CCG	-	-	4						4
CGG	-	-	3						3
CTG	-	-	3						3
GCA	-	-				1			1
GCC	-	-	1	1					2
GCG	-	-	1						1
GTG	-	-	1						1
TCG	-	-	1						1
ATAAA	2								2
CCACG	1								1
CGCGG	1								1
GCCGG	1								1
GCGCC	1								1
GGCGC	1								1
GGTCA				1					1
TTATT	1								1
CGCCCT	1								1
CTCTGG								1	1
CTGGTG	1								1
GAAGTC	1								1
GACGAA	1								1
GCTCCG		1							1
TTCCAC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1					1
CG/CG	-	-	-	3	1				4
ACC/GGT	-	-	2						2
ACG/CGT	-	-	1						1
AGC/CTG	-	-	4			1			5
CCG/CGG	-	-	9	1					10
AAAAT/ATTTT	3								3
ACCTG/AGGTC				1					1
ACGCC/CGTGG	1								1
CCCGG/CCGGG	1								1
CCGCG/CGCGG	3								3
AAGACG/CGTCTT	1								1
AAGTCG/ACTTCG	1								1
AAGTGG/ACTTCC	1								1
ACCAGC/CTGGTG	1								1
AGAGCC/CTCTGG								1	1
AGCCGG/CCGGCT		1							1
AGGGCG/CCCTCG	1								1
