Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-22/megassr/results/hub_GCA_060581875.1/fasta/hub_GCA_060581875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           5152108
Total number of identified SSRs:                 17
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	6
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
AC	-	-	-	1																											1
CTG	-	-	1																												1
AAGAG		1																													1
CAAAC	1																														1
GCAAC	1																														1
GCGCA	1																														1
GTTTG	1																														1
TGTTT	1																														1
AACAGC																								1							1
AGCAGA							1																								1
CAGAAC																														1	1
CAGAGC														1																	1
CAGCTC		1																													1
GCGAGT		1																													1
GTTTAG	1																														1
TCTACT	1																														1
TCTCTA				1																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
AC/GT	-	-	-	1																											1
AGC/CTG	-	-	1																												1
AAAAC/GTTTT	1																														1
AAACC/GGTTT	2																														2
AACGC/CGTTG	1																														1
AAGAG/CTCTT		1																													1
AGCGC/CGCTG	1																														1
AAACCT/AGGTTT	1																														1
AACAGC/CTGTTG																								1							1
AACCAG/CTGGTT																														1	1
AAGCAG/CTGCTT							1																								1
AAGTAG/ACTTCT	1																														1
ACTCGC/AGTGCG		1																													1
AGAGAT/ATCTCT				1																											1
AGAGCC/CTCTGG														1																	1
AGCTCC/AGCTGG		1																													1
