Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCA_060508225.1/fasta/hub_GCA_060508225.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              66
Total size of examined sequences (bp):           5428454
Total number of identified SSRs:                 33
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	16
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	1	1					2
GC	-	-	-	1						1
CCG	-	-	2							2
CGC	-	-	1							1
CGG	-	-	3							3
CTG	-	-	3							3
GAC	-	-	1							1
GCC	-	-	1	1						2
GCG	-	-	2							2
GGT	-	-	1							1
GTC	-	-	1							1
AATAA	1									1
ATAAA	1									1
CCACG	1									1
CCCGG	1									1
CGCGG	1									1
GCGCC	1									1
CACCAG									1	1
CTGGTG	1									1
GAAGTC	1									1
GACGAA	1									1
GATACC	1									1
GCTCCG		1								1
GGCCAG	1									1
TATTTT	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	2	1					3
ACC/GGT	-	-	1							1
ACG/CGT	-	-	2							2
AGC/CTG	-	-	3							3
CCG/CGG	-	-	9	1						10
AAAAT/ATTTT	2									2
ACGCC/CGTGG	1									1
CCCGG/CCGGG	1									1
CCGCG/CGCGG	2									2
AAAAAT/ATTTTT	1									1
AAGACG/CGTCTT	1									1
AAGTCG/ACTTCG	1									1
ACCAGC/CTGGTG	1								1	2
ACCGAT/ATCGGT	1									1
AGCCGG/CCGGCT		1								1
AGGGCC/CCCTGG	1									1
