Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-69/megassr/results/hub_GCA_060507205.1/fasta/hub_GCA_060507205.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              37
Total size of examined sequences (bp):           5177953
Total number of identified SSRs:                 34
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	16
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	1		1
TA	-	-	-	1		1
CAG	-	-	2			2
CCA	-	-	1			1
CCG	-	-	3			3
CGC	-	-	1			1
CGG	-	-	3			3
CTG	-	-	1			1
GCA	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1			1
GGC	-	-		1		1
TCG	-	-	1			1
CCACG	1					1
CGCGG	1					1
GCGAC	1					1
GCGCC	1					1
TTATT	1					1
CGCCCG	1					1
CTCACC				1		1
GAAGTC	1					1
GACGAA	1					1
GATACC	1					1
GCTCCG		1				1
GGGGCT	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	1		1
CG/CG	-	-	-	3	1	4
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	4			4
CCG/CGG	-	-	9	1		10
AAAAT/ATTTT	1					1
ACGCC/CGTGG	1					1
ACGCG/CGCGT	1					1
CCGCG/CGCGG	2					2
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCCTC/AGGGTG				1		1
ACCGAT/ATCGGT	1					1
AGCCCC/CTGGGG	1					1
AGCCGG/CCGGCT		1				1
CCCGCG/CGCGGG	1					1
