Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCA_060506965.1/fasta/hub_GCA_060506965.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              34
Total size of examined sequences (bp):           5139427
Total number of identified SSRs:                 37
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	16
5	6
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	2	1			3
GC	-	-	-	1				1
CCG	-	-	3					3
CGG	-	-	4					4
CTG	-	-	2					2
GCA	-	-	1					1
GCC	-	-		1				1
GCG	-	-	2					2
GGC	-	-	1					1
GGT	-	-	1					1
TCG	-	-	1					1
AATAA	1							1
ATAAA	1							1
CCACG	1							1
CCCGG	1							1
CGCGG	1							1
GGCGC	1							1
CAGCCG	1							1
CGCCAT	1							1
CGGTAT	1							1
CTGGTG	1							1
GAAGTC	1							1
GACGAA	1							1
GAGAGT							1	1
GCTCCG		1						1
GCTCCT	1							1
GGCCAG	1							1
GTGGAA	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	3	1			4
ACC/GGT	-	-	1					1
ACG/CGT	-	-	1					1
AGC/CTG	-	-	3					3
CCG/CGG	-	-	10	1				11
AAAAT/ATTTT	2							2
ACGCC/CGTGG	1							1
CCCGG/CCGGG	1							1
CCGCG/CGCGG	2							2
AAGACG/CGTCTT	1							1
AAGTCG/ACTTCG	1							1
AAGTGG/ACTTCC	1							1
ACCAGC/CTGGTG	1							1
ACCGAT/ATCGGT	1							1
ACTCTC/AGAGTG							1	1
AGCAGG/CCTGCT	1							1
AGCCGC/CGGCTG	1							1
AGCCGG/CCGGCT		1						1
AGGGCC/CCCTGG	1							1
ATCGCC/ATGGCG	1							1
