Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCA_060506805.1/fasta/hub_GCA_060506805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              43
Total size of examined sequences (bp):           5289509
Total number of identified SSRs:                 40
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	19
5	9
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	1		1
CAG	-	-	1			1
CCG	-	-	3			3
CGC	-	-	1			1
CGG	-	-	4			4
CTG	-	-	1			1
GCA	-	-	1			1
GCC	-	-	2			2
GCG	-	-	1			1
GGC	-	-		1		1
GGT	-	-	1			1
TCG	-	-	1			1
TGA	-	-	1			1
TGC	-	-	1			1
AATAA	1					1
ATAAA	1					1
CCACG	1					1
CCCGG	1					1
CCGGA	1					1
CGCGG	1					1
GCGAC	1					1
GGAAG	1					1
GGCGC	1					1
CACCAG	1					1
CCAGAA	1					1
GAAGTC	1					1
GACGAA	1					1
GAGTCG	1					1
GCTCCG		1				1
GTGGAA	1					1
TCCGAG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	3	1	4
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	4			4
ATC/ATG	-	-	1			1
CCG/CGG	-	-	11	1		12
AAAAT/ATTTT	2					2
AAGGG/CCCTT	1					1
ACCGG/CCGGT	1					1
ACGCC/CGTGG	1					1
ACGCG/CGCGT	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	2					2
AACCAG/CTGGTT	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACTCCG/AGTCGG	1					1
ACTCGG/AGTCCG	1					1
AGCCGG/CCGGCT		1				1
