Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-65/megassr/results/hub_GCA_060506745.1/fasta/hub_GCA_060506745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              64
Total size of examined sequences (bp):           5294947
Total number of identified SSRs:                 38
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	16
5	9
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	1		1
CAG	-	-	2			2
CCA	-	-	1			1
CCG	-	-	2			2
CGC	-	-	1			1
CGG	-	-	3			3
CTG	-	-	1			1
GCA	-	-		1		1
GCC	-	-	2			2
GGC	-	-	1	1		2
GTC	-	-	1			1
AATAA	1					1
ATAAA	1					1
CCCGG	1					1
CGCGG	1					1
CGTGG	1					1
GCCGC	1					1
GCGCC	1					1
GCGCT		1				1
GCTGG			1			1
CACCAG	1					1
CAGGAA	1					1
CCGGAG		1				1
GAAGTC	1					1
GACGAA	1					1
GCGCTG	1					1
GGCGCT	1					1
GTGGAA	1					1
TGCGGC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	3	1	4
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	3	1		4
CCG/CGG	-	-	9	1		10
AAAAT/ATTTT	2					2
ACGCC/CGTGG	1					1
AGCCC/CTGGG			1			1
AGCGC/CGCTG		1				1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AACAGG/CCTGTT	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
AGCCGC/CGGCTG	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	2					2
