Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-66/megassr/results/hub_GCA_060506645.1/fasta/hub_GCA_060506645.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              43
Total size of examined sequences (bp):           5473338
Total number of identified SSRs:                 41
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	20
5	7
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2	1		3
GC	-	-	-	1			1
CAG	-	-	2				2
CCA	-	-	1				1
CCG	-	-	4				4
CGG	-	-	3				3
GCA	-	-	2				2
GCC	-	-	2				2
GCG	-	-	1				1
GGC	-	-		2		1	3
GTC	-	-	1				1
TCG	-	-	1				1
AATAA	1						1
ATAAA	1						1
CCCGG	1						1
CGCGC	1						1
CGCGG	1						1
CGTGG	1						1
GGCGC	1						1
CACCAG	1						1
CCGGAG		1					1
CGGTAT	1						1
CTGGCC	1						1
GAAGTC	1						1
GACGAA	1						1
GCGCCA	1						1
GGGGCT	1						1
GTGGAA	1						1
TTCTGC		1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	3	1		4
ACC/GGT	-	-	1				1
ACG/CGT	-	-	2				2
AGC/CTG	-	-	4				4
CCG/CGG	-	-	10	2		1	13
AAAAT/ATTTT	2						2
ACGCC/CGTGG	1						1
CCCGG/CCGGG	1						1
CCGCG/CGCGG	3						3
AAGACG/CGTCTT	1						1
AAGCAG/CTGCTT		1					1
AAGTCG/ACTTCG	1						1
AAGTGG/ACTTCC	1						1
ACCAGC/CTGGTG	1						1
ACCGAT/ATCGGT	1						1
AGCCCC/CTGGGG	1						1
AGCCGG/CCGGCT		1					1
AGCGCC/CGCTGG	1						1
AGGGCC/CCCTGG	1						1
