Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-21/megassr/results/hub_GCA_060434045.1/fasta/hub_GCA_060434045.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           5152248
Total number of identified SSRs:                 17
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	6
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
AC	-	-	-	1																												1
CTG	-	-	1																													1
AAGAG		1																														1
ACCAA	1																															1
CAAAA	1																															1
CAAAC	1																															1
GCAAC	1																															1
GCGCA	1																															1
ACTCGC		1																														1
AGCAGA							1																									1
CAGAAC																															1	1
CAGAGC														1																		1
CAGCTC		1																														1
CCTAAA	1																															1
TCTACT	1																															1
TCTCTA				1																												1
TGTTGC																									1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
AC/GT	-	-	-	1																												1
AGC/CTG	-	-	1																													1
AAAAC/GTTTT	1																															1
AAACC/GGTTT	2																															2
AACGC/CGTTG	1																															1
AAGAG/CTCTT		1																														1
AGCGC/CGCTG	1																															1
AAACCT/AGGTTT	1																															1
AACAGC/CTGTTG																									1							1
AACCAG/CTGGTT																															1	1
AAGCAG/CTGCTT							1																									1
AAGTAG/ACTTCT	1																															1
ACTCGC/AGTGCG		1																														1
AGAGAT/ATCTCT				1																												1
AGAGCC/CTCTGG														1																		1
AGCTCC/AGCTGG		1																														1
