Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-23/megassr/results/hub_GCA_060433945.1/fasta/hub_GCA_060433945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           5156473
Total number of identified SSRs:                 15
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	4
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AC	-	-	-	1						1
CTG	-	-	1							1
AAGAG			1							1
CAAAC	1									1
GAACT	1									1
GCGCA	1									1
AGCAGA									1	1
AGCCAC									1	1
CACTCC	1									1
GTGGCG	1									1
TATCGG				1						1
TCTACT	1									1
TCTCTA			1							1
TGTTGC							1			1
TTTTTA		1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AC/GT	-	-	-	1						1
AGC/CTG	-	-	1							1
AAACC/GGTTT	1									1
AACTG/AGTTC	1									1
AAGAG/CTCTT			1							1
AGCGC/CGCTG	1									1
AAAAAT/ATTTTT		1								1
AACAGC/CTGTTG							1			1
AAGCAG/CTGCTT									1	1
AAGTAG/ACTTCT	1									1
ACAGCC/CTGTGG									1	1
ACCGAT/ATCGGT				1						1
ACCGCC/CGGTGG	1									1
ACTCCC/AGTGGG	1									1
AGAGAT/ATCTCT			1							1
