Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCA_058889075.1/fasta/hub_GCA_058889075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              77
Total size of examined sequences (bp):           1996393
Total number of identified SSRs:                 25
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	3
4	2
5	9
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AG	-	-	-									1									1
ATA	-	-	1																		1
GAT	-	-	1																		1
TGG	-	-	1																		1
ATTT	-	1																			1
TAAT	-	1																			1
AAAAC	1																				1
AATAT	1																				1
ATAAA	2																				2
TAATT	1																				1
TATAA	1																				1
TATTT	1																				1
TTAAA	1																				1
TTATA	1																				1
AAACCA	1																				1
AAAGCA	1																				1
AAATCA	1																				1
AGAAAA	1																				1
GAAAAA	1																				1
GCATAA	1																				1
GCGGTG		1																			1
TGATTT	1																				1
TTTATC	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AG/CT	-	-	-									1									1
AAT/ATT	-	-	1																		1
ACC/GGT	-	-	1																		1
ATC/ATG	-	-	1																		1
AAAT/ATTT	-	1																			1
AATT/AATT	-	1																			1
AAAAC/GTTTT	1																				1
AAAAT/ATTTT	3																				3
AAATT/AATTT	2																				2
AATAT/ATATT	3																				3
AAAAAG/CTTTTT	2																				2
AAAACC/GGTTTT	1																				1
AAAAGC/CTTTTG	1																				1
AAAATC/ATTTTG	2																				2
AAAGAT/ATCTTT	1																				1
AAGCAT/ATGCTT	1																				1
ACCGCC/CGGTGG		1																			1
