Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-23/megassr/results/hub_GCA_058688295.1/fasta/hub_GCA_058688295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              56
Total size of examined sequences (bp):           5582510
Total number of identified SSRs:                 43
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	18
4	1
5	11
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	2	1				3
GC	-	-	-	1					1
CCG	-	-	3						3
CGC	-	-		1					1
CGG	-	-	1						1
CTG	-	-	3						3
GAC	-	-	2						2
GCC	-	-	1	1					2
GCG	-	-	3						3
GGC	-	-	2						2
GGT	-	-	1						1
CCAG	-	1							1
AATAA	1								1
ATAAA	1								1
CCCGG	1								1
CCCTG	1								1
CCGCG	1								1
CGTGG	3								3
CTGGT	1								1
GGCGC	2								2
CCGGAG		3							3
CGACTT	1								1
CTCACC		1							1
CTGGTG	1								1
GATGAA								1	1
GTGGAA	1								1
TCTTCG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	3	1				4
ACC/GGT	-	-	1						1
ACG/CGT	-	-	2						2
AGC/CTG	-	-	3						3
CCG/CGG	-	-	10	2					12
AGCC/CTGG	-	1							1
AAAAT/ATTTT	2								2
ACCAG/CTGGT	1								1
ACGCC/CGTGG	3								3
AGGGC/CCCTG	1								1
CCCGG/CCGGG	1								1
CCGCG/CGCGG	3								3
AAGACG/CGTCTT	1								1
AAGATG/ATCTTC								1	1
AAGTCG/ACTTCG	1								1
AAGTGG/ACTTCC	1								1
ACCAGC/CTGGTG	1								1
ACCCTC/AGGGTG		1							1
AGCCGG/CCGGCT		3							3
