Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-130/megassr/results/hub_GCA_058258585.1/fasta/hub_GCA_058258585.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              30
Total size of examined sequences (bp):           1749721
Total number of identified SSRs:                 26
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
4	2
5	11
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
ATT	-	-	1	1
CAT	-	-	1	1
TGG	-	-	1	1
AAAT	-	1		1
TAAT	-	1		1
AATAT	1			1
ATAAA	1			1
ATGCG	1			1
GTTTT	1			1
TAATT	1			1
TATAA	1			1
TATTT	1			1
TTATA	1			1
TTTAA	1			1
TTTAT	1			1
TTTTC	1			1
AAACCA	1			1
AAAGCA	1			1
AGCTGG	1			1
ATTTTT	1			1
CTTTAG	1			1
GCGGTG		1		1
TGATTT	1			1
TTATGC	1			1
TTTATG	1			1
TTTTTC	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAT/ATT	-	-	1	1
ACC/GGT	-	-	1	1
ATC/ATG	-	-	1	1
AAAT/ATTT	-	1		1
AATT/AATT	-	1		1
AAAAC/GTTTT	1			1
AAAAG/CTTTT	1			1
AAAAT/ATTTT	3			3
AAATT/AATTT	2			2
AATAT/ATATT	3			3
ATCGC/ATGCG	1			1
AAAAAG/CTTTTT	1			1
AAAAAT/ATTTTT	1			1
AAAACC/GGTTTT	1			1
AAAAGC/CTTTTG	1			1
AAAATC/ATTTTG	1			1
AAACAT/ATGTTT	1			1
AAAGCT/AGCTTT	1			1
AAGCAT/ATGCTT	1			1
ACCGCC/CGGTGG		1		1
AGCTCC/AGCTGG	1			1
