Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-106/megassr/results/hub_GCA_058256995.1/fasta/hub_GCA_058256995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              20
Total size of examined sequences (bp):           1708012
Total number of identified SSRs:                 19
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
5	5
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CT	-	-	-		1	1
TAT	-	-	2			2
TGTT	-	1				1
AAAAT	1					1
AATTT	1					1
TTTCT	1					1
TTTTA	1	1				2
AAAGCT	1					1
ATTTAA	1					1
CACGGA	1					1
CTAAAG	2					2
GCTCCA	1					1
TAAATT	1					1
TTTAAA	1					1
TTTTTC	1					1
TTTTTG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-		1	1
AAT/ATT	-	-	2			2
AAAC/GTTT	-	1				1
AAAAG/CTTTT	1					1
AAAAT/ATTTT	2	1				3
AAATT/AATTT	1					1
AAAAAC/GTTTTT	1					1
AAAAAG/CTTTTT	1					1
AAAGCT/AGCTTT	3					3
AAATTT/AAATTT	3					3
ACACGG/CCGTGT	1					1
AGCTCC/AGCTGG	1					1
