Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_058256875.1/fasta/hub_GCA_058256875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              20
Total size of examined sequences (bp):           1657020
Total number of identified SSRs:                 21
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	2
5	9
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-			1	1
ATA	-	-	2				2
TGG	-	-	1				1
AAAT	-	1					1
TAAT	-	1					1
AATAT	1						1
ATAAA	1						1
ATGCG	1						1
GTTTT	1						1
TAATT	1						1
TATAA	1						1
TATTT	1						1
TTTAT	1						1
TTTTC	1						1
AAACCA	1						1
AAAGCA	1						1
TGATTT	1						1
TGCTGG	1						1
TTATGC	1						1
TTTTTC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-			1	1
AAT/ATT	-	-	2				2
ACC/GGT	-	-	1				1
AAAT/ATTT	-	1					1
AATT/AATT	-	1					1
AAAAC/GTTTT	1						1
AAAAG/CTTTT	1						1
AAAAT/ATTTT	3						3
AAATT/AATTT	1						1
AATAT/ATATT	2						2
ATCGC/ATGCG	1						1
AAAAAG/CTTTTT	1						1
AAAACC/GGTTTT	1						1
AAAAGC/CTTTTG	1						1
AAAATC/ATTTTG	1						1
AAGCAT/ATGCTT	1						1
ACCAGC/CTGGTG	1						1
