Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-19/megassr/results/hub_GCA_058255875.1/fasta/hub_GCA_058255875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              34
Total size of examined sequences (bp):           1617266
Total number of identified SSRs:                 15
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
4	1
5	7
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
CAT	-	-	1	1
AACA	-	1		1
AAAAT	1			1
ATTTT	1			1
TAAAA	1			1
TTAAA	1			1
TTTCT	1			1
TTTTA	2			2
AGCTTT	1			1
ATTTAA	1			1
GCTCCA	1			1
TTTAAA	1			1
TTTTTC	1			1
TTTTTG	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
ATC/ATG	-	-	1	1
AAAC/GTTT	-	1		1
AAAAG/CTTTT	1			1
AAAAT/ATTTT	5			5
AAATT/AATTT	1			1
AAAAAC/GTTTTT	1			1
AAAAAG/CTTTTT	1			1
AAAGCT/AGCTTT	1			1
AAATTT/AAATTT	2			2
AGCTCC/AGCTGG	1			1
