Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_058219255.1/fasta/hub_GCA_058219255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              7790
Total size of examined sequences (bp):           85938520
Total number of identified SSRs:                 16683
Number of SSR containing sequences:              1171
Number of sequences containing more than 1 SSR:  774
Number of SSRs present in compound formation:    1804


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	395
2	9146
3	3589
4	1208
5	1758
6	587

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	15	12	9	11	6	7	3	7	1		2		1	1				2		1	1			2			1					1	1						1		1													86
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	26	24	14	12	8	4	2	5	2	2	2		1			2	1	1																																				106
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	15	22	14	13	8	6	5	7	3	9	4	1	2	4	1	2		1		1		1																																119
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	21	8	11	7	9	5	5	2	2	2	2	4		1					1	2			1					1																										84
AC	-	-	-	347	294	225	180	173	116	68	55	25	17	15	10	6	2	1	1	2	1	1	2	1	2		2	1																																											1547
AG	-	-	-	144	86	81	51	43	39	16	14	6	4	3	4	1	2	2											1																																										497
AT	-	-	-	210	124	125	84	70	41	29	14	11	10	4	4	1	1		2																																																				730
CA	-	-	-	247	192	151	160	123	84	65	38	15	16	4	9	7	2		1	3	3	1			1	2	2		2		1																																								1129
CG	-	-	-	34	25	8	3																																																																70
CT	-	-	-	117	65	58	50	29	20	11	12	5	4	2		1	1	1			1					1			1	1																																									380
GA	-	-	-	146	106	64	51	36	22	21	16	4	1	3	1	5		2	1		2								1													1																													483
GC	-	-	-	77	27	21	5																																																																130
GT	-	-	-	286	249	223	149	131	105	60	50	25	17	10	9	5	2	4	4			1	1	1	1				1	1		1																																							1336
TA	-	-	-	220	166	128	82	63	67	30	24	18	6	4	2	1		1	1																																																				813
TC	-	-	-	156	119	107	74	68	42	29	16	16	15	1	2	1	3	3							1																																														653
TG	-	-	-	293	261	176	185	138	80	77	46	32	18	23	10	7	4	3	6	2	4	2	2	1		1	2	1	2			1				1																																			1378
AAC	-	-	73	38	30	14	7			1																																																													163
AAG	-	-	21	6	3	2		1	1																																																														34
AAT	-	-	74	24	19	3	4		1					1																																																									126
ACA	-	-	49	33	14	12	4	1						1																																																									114
ACC	-	-	8	9	4		1																																																																22
ACG	-	-	42	25	15	7	4	2																																																															95
ACT	-	-	9	2	2					1																																																													14
AGA	-	-	15	5	4	1						1																																																										1	27
AGC	-	-	19	6	8	6	1					1																																																											41
AGG	-	-	4	2		2																																																																	8
AGT	-	-	7	1	3																																																																		11
ATA	-	-	32	10	3	10	2			1																																																													58
ATC	-	-	19	9	4	3																																																																	35
ATG	-	-	17	15	3	3		1																																																															39
ATT	-	-	29	17	11	3	1	1	1																																																														63
CAA	-	-	68	51	20	14	8	1	3																																																														165
CAC	-	-	15	5	1																																																																		21
CAG	-	-	57	31	14	10	4	2	1																																																														119
CAT	-	-	17	17	4	2			1																																																														41
CCA	-	-	14	9	6		5	1																																																															35
CCG	-	-	34	19	6	2																																																																	61
CCT	-	-	6	2																																																																			8
CGA	-	-	53	23	14	7	3	2	2										1																																																				105
CGC	-	-	51	19	15	2	3	2																																																															92
CGG	-	-	37	16	9	4	3				1		1																																																										71
CGT	-	-	50	27	12	8	6	1	1	1		1																																																											107
CTA	-	-	14	2	1		1																																																																18
CTC	-	-	8																																																																				8
CTG	-	-	20	16	9	6	2	4																																																															57
CTT	-	-	23	9	3	1	2						1																																																										39
GAA	-	-	31	9	5	2	1	1																																																															49
GAC	-	-	45	17	13	6	4	1			1																																																												87
GAG	-	-	4	2	1																																																																		7
GAT	-	-	26	15	8	2	1			2																																																													54
GCA	-	-	46	17	12	4																																																																	79
GCC	-	-	55	35	14	5	4																																																																113
GCG	-	-	46	19	11	8	5																																																																89
GCT	-	-	46	20	9	2	1																																																																78
GGA	-	-	8	2	2																																																																		12
GGC	-	-	60	24	10	7	6	1	1																																																														109
GGT	-	-	15	6	3				1					1																																																									26
GTA	-	-	6	2	2	1	2			1																																																													14
GTC	-	-	42	15	15	7	6	3		1																																																													89
GTG	-	-	13	5	1		1	1																																																															21
GTT	-	-	39	41	20	5	6	3																																																															114
TAA	-	-	18	6	7	6	1	1																																																															39
TAC	-	-	5	3	1	1																1																																																	11
TAG	-	-	3	3	1				1																																																														8
TAT	-	-	19	7	7	4	1	1	1																																																														40
TCA	-	-	27	12	6		2																																																																47
TCC	-	-	7	1	1		1																																																																10
TCG	-	-	53	32	12	5	4	1	1	1			1																																																										110
TCT	-	-	17	7				1	1																																												1																		27
TGA	-	-	23	7	6	1				1																																																													38
TGC	-	-	40	12	9	3	3	1	1																																																														69
TGG	-	-	19	4	5																																																																		28
TGT	-	-	72	44	12	6	2	1	1																																																														138
TTA	-	-	36	19	14	7	2	1	1	1		1																																																											82
TTC	-	-	35	13	5	2	2	3																																									1																						61
TTG	-	-	71	34	15	13	7	1	1	1																																																													143
AAAC	-	62	27	6	2	1																																																																	98
AAAG	-	5				3	1				1																																																												10
AAAT	-	49	14	4																																																																			67
AACA	-	9	2	1																																																																			12
AACG	-	13	8	3	1			1																																																															26
AAGA	-	2		1																																																																			3
AAGC	-			2																																																																			2
AAGG	-	1			2				2																																																														5
AATA	-	5	4																																																																				9
AATC	-	3	3																																																																				6
AATG	-	1		2																																																																			3
AATT	-	1																																																																					1
ACAA	-	1			1																																																																		2
ACAG	-	5	1																																																																				6
ACAT	-	1			1	1																																																																	3
ACCC	-	1																																																																					1
ACCG	-	2	3	1	1																																																																		7
ACGA	-	7		1	1																																																																		9
ACGC	-	8	6		1																																																																		15
ACGG	-	1	2				1																																																																4
ACGT	-	3																																																																					3
ACTG	-	1																																																																					1
AGAA	-	4			1																																																																		5
AGAC	-	3	1																																																																				4
AGAT	-	3	3	1	1																																																																		8
AGCC	-	1																																																																					1
AGCG	-	1	2																																																																				3
AGGA	-	1																																																																					1
AGGC	-	5		1																																																																			6
AGGT	-	2																																																																					2
AGTC	-	3	1																																																																				4
ATAA	-	6																																																																					6
ATAC	-	5	1	4																																																																			10
ATAG	-	1		1																																																																			2
ATCA	-	1		1																																																																			2
ATCC	-	4	3	1		2																																																																	10
ATCG	-	2		1																																																																			3
ATCT	-		2																																																																				2
ATGC	-		2																																																																				2
ATGG	-	3	1	3				1																																																															8
ATGT	-	1	3																																																																				4
ATTA	-	1																																																																					1
ATTC	-	1																																																																					1
ATTG	-					1				1																																																													2
ATTT	-	18	1	1																																																																			20
CAAA	-	11	2	1	1																																																																		15
CAAC	-	2																																																																					2
CAAT	-						1																																																																1
CACC	-	1																																																																					1
CACG	-	13	3																																																																				16
CACT	-	1																																																																					1
CAGA	-	4	1																																																																				5
CAGC	-	3				1			1																																																														5
CAGG	-	2		1		1																																																																	4
CAGT	-	1			1																																																																		2
CATA	-	2					1																																																																3
CATC	-	2	1																																																																				3
CATG	-					1																																																																	1
CATT	-	1	1			1																																																																	3
CCAC	-	3																																																																					3
CCAG	-	4	1																																																																				5
CCAT	-	2	6	1																																																																			9
CCCA	-	1	1																																																																				2
CCCG	-	2	1																																																																				3
CCCT	-	2																																																																					2
CCGA	-	1	2																																																																				3
CCGC	-	1	1	1																																																																			3
CCGG	-	2	1																																																																				3
CCGT	-	7	1	1																																																																			9
CCTG	-	1																																																																					1
CGAA	-	2		1																																																																			3
CGAC	-	1	1			1																																																																	3
CGAG	-	2	1																																																																				3
CGAT	-			1																																																																			1
CGCA	-	4	3																																																																				7
CGCC	-			1																																																																			1
CGCT	-	1	1																																																																				2
CGGA	-	2		2																																																																			4
CGGC	-	2	1																																																																				3
CGGG	-	3																																																																					3
CGGT	-		1	2			1																																																																4
CGTA	-	3																																																																					3
CGTC	-	7	5	1	1																																																																		14
CGTG	-	3	1				1																																																																5
CGTT	-	7	7	3	1	4		1																																																															23
CTAT	-	2				1																																																																	3
CTCA	-	1																																																																					1
CTCC	-	1																																																																					1
CTCG	-	8	3	1																																																																			12
CTGA	-	2																																																																					2
CTGC	-	5	1	2	3																																																																		11
CTGG	-	5		1																																																																			6
CTGT	-	5	2				1																																																																8
GAAA	-	2																																																																					2
GAAC	-	5		1	2																																																																		8
GAAG	-	1																																																																					1
GAAT	-	2							1																																																														3
GACA	-		2		3																																																																		5
GACC	-	1																																																																					1
GACG	-	3	1	2																																																																			6
GACT	-	2	1																																																																				3
GAGC	-	3	2																																																																				5
GAGT	-	1			1																																																																		2
GATA	-	2	1																																																																				3
GATG	-	3	2			3																1																																																	9
GATT	-	1		1																																																																			2
GCAC	-	2	2	1																																																																			5
GCAG	-	1	1																																																																				2
GCCA	-	4	1																																																																				5
GCCC	-	2																																																																					2
GCCG	-	6	1																																																																				7
GCCT	-		1																																																																				1
GCGA	-	4																																																																					4
GCGG	-	1		1																																																																			2
GCGT	-	3	2																																																																				5
GCTC	-	4	1																																																																				5
GCTG	-	2	3																																																																				5
GGAC	-	6	3																																																																				9
GGAT	-	6	1																																																																				7
GGCA	-	2																																																																					2
GGCC	-	6	1																																																																				7
GGCG	-	3	2																																																																				5
GGCT	-	1	1			1																																																																	3
GGGC	-	4																																																																					4
GGGT	-	1																																																																					1
GGTC	-	1	2	1							1																																																												5
GGTG	-			1																																																																			1
GTAC	-	3	3																																																																				6
GTAG	-	1																				1																																																	2
GTAT	-		1	1																																																																			2
GTCA	-	1		1																																																																			2
GTCC	-	2	1	1																																																																			4
GTCG	-	3	1				1																																																																5
GTCT	-	2	1																																																																				3
GTGC	-	7	5	1																																																																			13
GTTA	-	1																																																																					1
GTTC	-	4	6	1	1																																																																		12
GTTG	-	1	1																																																																				2
GTTT	-	17	6	2		2																																																																	27
TAAA	-	10		2	3																																																																		15
TAAC	-	1																																																																					1
TACA	-	1		1																																																																			2
TAGA	-		1																																																																				1
TAGC	-	1																																																																					1
TAGG	-		1																																																																				1
TAGT	-	1																																																																					1
TATC	-	1	1																																																																				2
TATG	-	5																																																																					5
TATT	-	21	3	1	1																																																																		26
TCAC	-		1																																																																				1
TCAG	-	1																																																																					1
TCAT	-	2																																																																					2
TCCA	-	4		2		1																																																																	7
TCCC	-	1																																																																					1
TCCG	-	4	2				1																																																																7
TCCT	-		1																																																																				1
TCGA	-	1																																																																					1
TCGC	-		1	2																																																																			3
TCGG	-	3	1																																																																				4
TCGT	-	10		2	1	1	1			1		1																																																											17
TCTA	-	3																																																																					3
TCTG	-	6	2																																																																				8
TCTT	-	1				1																																																																	2
TGAA	-	1		1																																																																			2
TGAC	-	1																																																																					1
TGAT	-	2																																																																					2
TGCC	-	2																																																																					2
TGCG	-	3	1	2																																																																			6
TGGA	-	2		1		1																																																																	4
TGGC	-	3	1																																																																				4
TGGG	-	1																																																																					1
TGTA	-	3				1																																																																	4
TGTC	-	3	1		1																																																																		5
TGTT	-	14	5	3																																																																			22
TTAT	-	13	1	2		1																																																																	17
TTCA	-	6	2																																																																				8
TTCC	-	1																																																																					1
TTCG	-	14	5	3	1	2																																																																	25
TTCT	-				1	1																																																																	2
TTGA	-	4	1																																																																				5
TTGG	-	1					1																																																																2
TTGT	-	17	5	1		1																																																																	24
TTTA	-	23	19	3	2			1																																																															48
TTTC	-	11	3	1	1																																																																		16
TTTG	-	37	7	3	3																																																																		50
AAAAC	108	32	5	2	1		1																																																																149
AAAAG	7																																																																						7
AAAAT	76	9	8	3		1																																																																	97
AAACA	39	7	2																																																																				48
AAACG	12	12																																																																					24
AAACT	1	3																																																																					4
AAAGA	2																																																																						2
AAAGC	1																																																																						1
AAAGG		1																																																																					1
AAATA	14	1	1			1																																																																	17
AAATC	4	1	1																																																																				6
AAATG	4																																																																						4
AAATT	1																																																																						1
AACAA	10	2	1																																																																				13
AACAC	1		1																																																																				2
AACAT	1																																																																						1
AACCA	1																																																																						1
AACCT	3	2				2										1																																																							8
AACGA	6	1																																																																					7
AACGC	1																																																																						1
AACGG	2		1																																																																				3
AACGT	1																																																																						1
AACTA	2																																																																						2
AAGAA	3																																																																						3
AAGAT	3	1																																																																					4
AAGGT		1																																																																					1
AAGTC	2																																																																						2
AAGTG	1																																																																						1
AATAA	6																																																																						6
AATCA		1																																																																					1
AATCT	1																																																																						1
AATGA	1																																																																						1
AATTA	1																																																																						1
AATTC	2																																																																						2
AATTG	3	1																																																																					4
AATTT	2																																																																						2
ACAAA	8	1	1																																																																				10
ACAAG	1																																																																						1
ACACG	1																																																																						1
ACAGA	1																																																																						1
ACATT	1																																																																						1
ACCAA	1																																																																						1
ACCTA	1	1																																																																					2
ACGAA	2	1	1																																																																				4
ACGAC	1																																																																						1
ACGCA	1																																																																						1
ACGCG	1																																																																						1
ACGTA	1																																																																						1
ACGTC	2																																																																						2
ACGTT	1																																																																						1
ACTCG										1																																																													1
ACTGT	3																																																																						3
ACTTG	3																																																																						3
AGAAA	1	1																																																																					2
AGAGA	2																																																																						2
AGATA		1																																																																					1
AGATG	1																																																																						1
AGCAG	1																																																																						1
AGCGA	1																																																																						1
AGCGC		1																																																																					1
AGCTC	1																																																																						1
AGGCC	1																																																																						1
AGGTC		1																																																																					1
AGGTT	9			1		1		2																																																															13
AGTAC	1																																																																						1
AGTAG	1																																																																						1
AGTAT	2																																																																						2
AGTCA	1																																																																						1
AGTCC	1																																																																						1
AGTCG	3																																																																						3
AGTTC	3																																																																						3
AGTTG	1																																																																						1
AGTTT	3																																																																						3
ATAAA	4	1		1		1																																																																	7
ATAAT	2	1																																																																					3
ATACC	3																																																																						3
ATACG				1																																																																			1
ATAGC	1																																																																						1
ATATA	3																																																																						3
ATATG		1																																																																					1
ATATT		1																																																																					1
ATCAA	3																																																																						3
ATCGA	2																																																																						2
ATCGC	1																																																																						1
ATCTT		1																																																																					1
ATGAA	4																																																																						4
ATGAC	1																																																																						1
ATGAT		1	1																																																																				2
ATGCG	1																																																																						1
ATGGG	1																																																																						1
ATGGT	1																																																																						1
ATGTT	1																																																																						1
ATTAC	1																																																																						1
ATTAG	1																																																																						1
ATTAT		1																																																																					1
ATTCA	1																																																																						1
ATTCG	2																																																																						2
ATTGA	2																																																																						2
ATTTA	1																																																																						1
ATTTC	5																																																																						5
ATTTG	2	1																																																																					3
ATTTT	26	4	1	1			1																																																																33
CAAAA	21	1																																																																					22
CAAAT	3																																																																						3
CAACA	1																																																																						1
CAACG	1																																																																						1
CAAGT	3	1																																																																					4
CAATG	2																																																																						2
CAATT	2																																																																						2
CACAA	1																																																																						1
CACAC	2																																																																						2
CACAG	2																																																																						2
CACCC	1																																																																						1
CACCG	1																																																																						1
CACGT	1																																																																						1
CACTG	1																																																																						1
CACTT	1																																																																						1
CAGCC	1																																																																						1
CAGTA	95	1	1																																																																				97
CAGTC		1																																																																					1
CAGTT		1																																																																					1
CATCG		1																																																																					1
CATGG	1																																																																						1
CATTC	1																																																																						1
CCAAT	1	1																																																																					2
CCATG	1																																																																						1
CCCAA	1																																																																						1
CCCAC		1																																																																					1
CCCCG	1																																																																						1
CCCCT	1																																																																						1
CCCGT	1																																																																						1
CCGGC	1																																																																						1
CCGGT	1																																																																						1
CCGTA		1																																																																					1
CCGTC	1	1																																																																					2
CCGTT	1																																																																						1
CCTAA	6	1								1							1																																																						9
CCTGG	1																																																																						1
CCTTG	1																																																																						1
CGAAA	3																																																																						3
CGAAC	1																																																																						1
CGAAT	1																																																																						1
CGACC	1																																																																						1
CGACG	2																																																																						2
CGACT	2								1																																																														3
CGAGC		1																																																																					1
CGAGG	1																																																																						1
CGAGT	1																																																																						1
CGATA	1																																																																						1
CGATT	2																																																																						2
CGCAC	1																																																																						1
CGCAG	2																																																																						2
CGCCC	1																																																																						1
CGCCG	1																																																																						1
CGCTT	1																																																																						1
CGGCT	1																																																																						1
CGGGA	1																																																																						1
CGGTC	1																																																																						1
CGTCA	1	1																																																																					2
CGTCT	1																																																																						1
CGTGC	1																																																																						1
CGTGG			1																																																																				1
CGTGT	1																																																																						1
CGTTA	1																																																																						1
CGTTC	1																																																																						1
CGTTG	1																																																																						1
CGTTT	10	1	1																																																																				12
CTAAC	13	4	3				1										1																																																						22
CTAAT	1																																																																						1
CTACG	1																																																																						1
CTAGT	1																																																																						1
CTATA	6																																																																						6
CTATC	1																																																																						1
CTCGA	1																																																																						1
CTCTG	1																																																																						1
CTCTT	1																																																																						1
CTGAA	1																																																																						1
CTGCC				1																																																																			1
CTGGG	1																																																																						1
CTGTA	3																																																																						3
CTGTG	1																																																																						1
CTGTT	2		1																																																																				3
CTTAT	2																																																																						2
CTTCA	1																																																																						1
CTTGA	3																																																																						3
CTTTA	1																																																																						1
CTTTG	2																																																																						2
CTTTT	4																																																																						4
GAAAA	15		1																																																																				16
GAAAC	7	1																																																																					8
GAAAT	2	1																																																																					3
GAAGA	2																																																																						2
GAATG	1																																																																						1
GAATT	3																																																																						3
GACAC	1																																																																						1
GACCG	1																																																																						1
GACGA	4																																																																						4
GACGC	1																																																																						1
GACGT	2																																																																						2
GACTC	2																																																																						2
GAGTT	1																																																																						1
GATCG	1																																																																						1
GATGC	1																																																																						1
GATTA	1	2																																																																					3
GATTT	4																																																																						4
GCAAA		1																																																																					1
GCAAC	1																																																																						1
GCACA	2																																																																						2
GCAGC	1																																																																						1
GCATT	1																																																																						1
GCCAG	2																																																																						2
GCCCA	1																																																																						1
GCCCG		1																																																																					1
GCCGG	1																																																																						1
GCCGT	1																																																																						1
GCCTT	1																																																																						1
GCGAT	1																																																																						1
GCGCT	1																																																																						1
GCGGC	1																																																																						1
GCGTC	1																																																																						1
GCGTG	1																																																																						1
GCGTT	1																																																																						1
GCTCA	1																																																																						1
GCTCG		1																																																																					1
GGACA	1																																																																						1
GGACG	1																																																																						1
GGATC		1																																																																					1
GGATT	1																																																																						1
GGCCA	1																																																																						1
GGCCG	1																																																																						1
GGCCT		1																																																																					1
GGCGG	1																																																																						1
GGCGT	1	1																																																																					2
GGCTC	1																																																																						1
GGGCA	1																																																																						1
GGGCC	2																																																																						2
GGTTA	4	5	2	1	2			1	2												1																																																		18
GGTTT	2																																																																						2
GTAAT	1																																																																						1
GTACA	4																																																																						4
GTACG	1																																																																						1
GTACT	3																																																																						3
GTAGC	1																																																																						1
GTAGT	1																																																																						1
GTATG	3																																																																						3
GTGCG	1																																																																						1
GTGGG	1																																																																						1
GTGTA		1																																																																					1
GTGTC	1																																																																						1
GTGTT	1																																																																						1
GTTAA	1																																																																						1
GTTAC	1																																																																						1
GTTAG	6			1				1																																																															8
GTTCA		1																																																																					1
GTTGA	1																																																																						1
GTTGC	1																																																																						1
GTTGT	1																																																																						1
GTTTA	1	1																																																																					2
GTTTC	6	6																																																																					12
GTTTG	1																																																																						1
GTTTT	30	6	1																																																																				37
TAAAA	13																																																																						13
TAAAT	3																																																																						3
TAACA	1																																																																						1
TAACC	12	3	1	1	1	1		1				1																																																											21
TAAGA	2		2																																																																				4
TAATA	1																																																																						1
TAATT	1																																																																						1
TACAC	1																																																																						1
TACAG	16																																																																						16
TACCT			1																																																																				1
TACTG	66																																																																						66
TAGAA	1																																																																						1
TAGAC	1																																																																						1
TAGAG	1																																																																						1
TAGAT	1																																																																						1
TAGGC	1																																																																						1
TAGGT	1	1		1					1																																																														4
TAGTC	1																																																																						1
TAGTT		1																																																																					1
TATAA	2																																																																						2
TATAC	3																																																																						3
TATAG	12																																																																						12
TATAT	2	1																																																																					3
TATCC	1																																																																						1
TATCT	1		2																																																																				3
TATGG										1																																																													1
TATGT			1																																																																				1
TATTA	1																																																																						1
TATTC	2																																																																						2
TATTT	20	8																																																																					28
TCAAG	1																																																																						1
TCAAT	2																																																																						2
TCACG	1																																																																						1
TCAGT	1																																																																						1
TCATC	1																																																																						1
TCATG	1																																																																						1
TCATT	1																																																																						1
TCCAT	1																																																																						1
TCCCC	1																																																																						1
TCCCG	1																																																																						1
TCCGA	1																																																																						1
TCCGT	1																																																																						1
TCGAT		1																																																																					1
TCGCC	1																																																																						1
TCGCG	1																																																																						1
TCGGA	1																																																																						1
TCGTC	2																																																																						2
TCTAT	1																																																																						1
TCTCG		1																																																																					1
TCTGT			1																																																																				1
TCTTC	1																																																																						1
TCTTT	3																																																																						3
TGAAA	6																																																																						6
TGAAT	2																																																																						2
TGACA	1																																																																						1
TGATT	2																																																																						2
TGCAA	2																																																																						2
TGCAT	1																																																																						1
TGCCA	1																																																																						1
TGCCG	1																																																																						1
TGCCT	1																																																																						1
TGCGC	1																																																																						1
TGCGG	1																																																																						1
TGCTC	1																																																																						1
TGCTG	1																																																																						1
TGCTT	1																																																																						1
TGGAA	1																																																																						1
TGGAT	1																																																																						1
TGGCA					1																																																																		1
TGGGG	1																																																																						1
TGGTA	1																																																																						1
TGGTT	1																																																																						1
TGTAA	1																																																																						1
TGTAC	5																																																																						5
TGTGA	2																																																																						2
TGTGC		1																																																																					1
TGTGT	1	1																																																																					2
TGTTG	1																																																																						1
TGTTT	26	11	1																																																																				38
TTAAA	3	1																																																																					4
TTAAC		1																																																																					1
TTAAG	1																																																																						1
TTAAT	1																																																																						1
TTAGA	3	1	1																																																																				5
TTAGG	8	2							1																																																														11
TTAGT			2																																																																				2
TTATA	2																																																																						2
TTATC	4	1																																																																					5
TTATG	1																																																																						1
TTATT	17		1	1																																																																			19
TTCAA	4	1																																																																					5
TTCCG	1																																																																						1
TTCGA	4																																																																						4
TTCGC	1																																																																						1
TTCGT	4	2																																																																					6
TTCTG	2																																																																						2
TTCTT	1																																																																						1
TTGAA	1																																																																						1
TTGAC	2																																																																						2
TTGAT	2																																																																						2
TTGCA	5																																																																						5
TTGGA	1																																																																						1
TTGGC	1																																																																						1
TTGGT	1																																																																						1
TTGTC	1																																																																						1
TTGTG	1																																																																						1
TTGTT	31	4																																																																					35
TTTAG	1																																																																						1
TTTAT	23	1	3																																																																				27
TTTCA	5	1	1																																																																				7
TTTCG	15	4																																																																					19
TTTCT	7																																																																						7
TTTGA	2																																																																						2
TTTGC	3																																																																						3
TTTGG			1																																																																				1
TTTGT	46	11	1	2																																																																			60
TTTTA	35	6	5																																																																				46
TTTTC	20																																																																						20
TTTTG	60	17		1																																																																			78
AAAAAC	22	2																																																																					24
AAAAAG	1																																																																						1
AAAAAT	18	1																																																																					19
AAAACA	3																																																																						3
AAAACG	2	1																																																																					3
AAAAGA	2																																																																						2
AAAAGC	1																																																																						1
AAAAGT			1																																																																				1
AAAATA	3																																																																						3
AAAATC	1																																																																						1
AAAATG	1																																																																						1
AAACAA	8																																																																						8
AAACGT	1																																																																						1
AAAGAA	1																																																																						1
AAAGCC	1																																																																						1
AAAGGC	2																																																																						2
AAATAA	2																																																																						2
AAATCA	1																																																																						1
AAATCT	1																																																																						1
AACAAT	1																																																																						1
AACAGA	1																																																																						1
AACGGC	1																																																																						1
AACGGG	1																																																																						1
AACGTA	1																																																																						1
AACGTG	1																																																																						1
AACTTC	3																																																																						3
AACTTG		1																																																																					1
AAGACG	1																																																																						1
AAGATA	1																																																																						1
AAGCCG	1																																																																						1
AAGTTG	5	1																																																																					6
AATAAA	2																																																																						2
AATGCG	1																																																																						1
AATGGA	1																																																																						1
AATTAT	1																																																																						1
ACAAAA	2																																																																						2
ACACAG	3	1																																																																					4
ACACAT	1																																																																						1
ACACGC	1																																																																						1
ACAGCA	1																																																																						1
ACATGG	1																																																																						1
ACCAAA	1																																																																						1
ACCGTG	1																																																																						1
ACCTTC	1																																																																						1
ACGACC	1																																																																						1
ACGACT		1																																																																					1
ACGCTA	1																																																																						1
ACGGAC	1																																																																						1
ACGGCG	1	1																																																																					2
ACTAAG	1																																																																						1
ACTAAT	1																																																																						1
ACTCCT	1																																																																						1
ACTGAC	1																																																																						1
ACTGGT	1																																																																						1
ACTTCA	1	2																																																																					3
ACTTTC	1																																																																						1
AGAAAA	1																																																																						1
AGAACG	1	2																																																																					3
AGAGAA	1																																																																						1
AGCAAC	1																																																																						1
AGCACC			1																																																																				1
AGCTGA	1																																																																						1
AGCTGG	1																																																																						1
AGGACA		1																																																																					1
AGTAGC		1																																																																					1
AGTCTT	1	1																																																																					2
AGTGCC			1																																																																				1
AGTTCT	1																																																																						1
ATACAC										1																																																													1
ATATAC	1																																																																						1
ATCACT	1																																																																						1
ATCGAA		1																																																																					1
ATCGAC		1			1																																																																		2
ATCGTG	1																																																																						1
ATCTAC	1																																																																						1
ATGAAT	1																																																																						1
ATGATT	1																																																																						1
ATGGCC	2																																																																						2
ATGGCG	1					1																																																																	2
ATGTCT	1																																																																						1
ATTGGT	1																																																																						1
ATTTGG	3																																																																						3
ATTTTC	1																																																																						1
ATTTTG	1																																																																						1
ATTTTT	3	1																																																																					4
CAAAAA	4																																																																						4
CAAAAG	1	1																																																																					2
CAAAAT	4																																																																						4
CAAAGG	1																																																																						1
CAAATC	14	3	5																																																																				22
CAACAG	3																																																																						3
CAACGA		1																																																																					1
CAACGT	1																																																																						1
CAACTT	1	1																																																																					2
CAAGTG	1																																																																						1
CAATTT	1																																																																						1
CACAAC	1																																																																						1
CACACG	2																																																																						2
CACAGC	1																																																																						1
CACATT	1																																																																						1
CACCGC	1																																																																						1
CACTTG	1			1										1																																																									3
CAGCAA	6																																																																						6
CAGTCG	1																																																																						1
CAGTGG	1																																																																						1
CATACA																					1																																																		1
CATCAA			1																																																																				1
CATCAC	1																																																																						1
CATTAT	1																																																																						1
CCAAAG	1																																																																						1
CCACGT	2																																																																						2
CCAGCG	1																																																																						1
CCATCA	1																																																																						1
CCGATG	1																																																																						1
CCGCTG					1																																																																		1
CCGGCA	1																																																																						1
CCGGCT	1																																																																						1
CCTGCG	1																																																																						1
CCTTCA	1																																																																						1
CCTTCT	1																																																																						1
CGAAAT	1																																																																						1
CGACAT	2																																																																						2
CGACGG	1																																																																						1
CGACGT	2																																																																						2
CGAGGA	1																																																																						1
CGATTG	1																																																																						1
CGCACA	1																																																																						1
CGCAGC	1																																																																						1
CGCCAG		1																																																																					1
CGCCAT	1																																																																						1
CGCCGT	1																																																																						1
CGCTGC		1																																																																					1
CGGCAA	1																																																																						1
CGGCGT	1	1																																																																					2
CGTAAC	1																																																																						1
CGTCCA	1																																																																						1
CGTCCG	1																																																																						1
CGTCCT	1																																																																						1
CGTCGA	1																																																																						1
CGTCGC	1		1																																																																				2
CGTCGG	1																																																																						1
CGTTGT	1																																																																						1
CTATCT	1																																																																						1
CTCAGA	1																																																																						1
CTCTAA	1																																																																						1
CTCTCG	1																																																																						1
CTGACG	1																																																																						1
CTGCCA	2																																																																						2
CTGCTA	1																																																																						1
CTTAAA	1																																																																						1
CTTCGG	1																																																																						1
CTTCTG		1																																																																					1
CTTTTT	4																																																																						4
GAAAAA	2																																																																						2
GAAACT	1																																																																						1
GAAAGA	1																																																																						1
GAAAGC	2																																																																						2
GAACAA	1																																																																						1
GAACCT	1																																																																						1
GAACGC		1																																																																					1
GAACTT	1																																																																						1
GAAGAC	2																																																																						2
GAAGAG	1																																																																						1
GAAGCG	1																																																																						1
GAATGT	1																																																																						1
GACACT							1						1																																																										2
GACCGA	1																																																																						1
GACGAT	4																																																																						4
GACGCC	1																																																																						1
GAGATA	1																																																																						1
GAGCAG	1																																																																						1
GAGTGC	1																																																																						1
GATATA	1																																																																						1
GATCAT	1																																																																						1
GATCTT	1																																																																						1
GATGAC	1																																																																						1
GATTTG	4	3	3																																																																				10
GCAACA	3		1																																																																				4
GCAACG	1																																																																						1
GCACCG	1																																																																						1
GCACCT	1																																																																						1
GCACTG	1																																																																						1
GCATAA	1																																																																						1
GCATCC		1																																																																					1
GCATTA	1																																																																						1
GCATTC	1																																																																						1
GCCGAA	3																																																																						3
GCCGAG	1																																																																						1
GCCGCT	1																																																																						1
GCGATG	1																																																																						1
GCGCCG	1																																																																						1
GCGGCA	2																																																																						2
GCGGCT	1	1																																																																					2
GCGGTG	1																																																																						1
GCGTCG	1																																																																						1
GCGTGT	1																																																																						1
GCTGCC	2																																																																						2
GCTGGT	1																																																																						1
GGAAAA	1																																																																						1
GGAGCT	1																																																																						1
GGATTT	6																																																																						6
GGCAAC	1																																																																						1
GGCACA	1																																																																						1
GGCAGT	1																																																																						1
GGCGCC	1																																																																						1
GGCGGA	2																																																																						2
GGCGTC	1																																																																						1
GGCTGC	1																																																																						1
GGGGTA	1																																																																						1
GTACAA	1																																																																						1
GTAGCC	1																																																																						1
GTATGC	1																																																																						1
GTCAGT	1																																																																						1
GTCGCA	1																																																																						1
GTCGTT	1																																																																						1
GTCTAT	1																																																																						1
GTCTCT	1																																																																						1
GTCTTC			1																																																																				1
GTGATG	1																																																																						1
GTGCGT	1																																																																						1
GTGCTG	1																																																																						1
GTGGAC	1																																																																						1
GTGGCT	1																																																																						1
GTGGTA	1																																																																						1
GTGGTT	1																																																																						1
GTGTCA						1																																																																	1
GTGTCT	1																																																																						1
GTGTGA	1																																																																						1
GTTAGG	1																																																																						1
GTTCAC	1																																																																						1
GTTCTA	1																																																																						1
GTTGCC	2		1	1																																																																			4
GTTTGC	1																																																																						1
GTTTTC		1																																																																					1
GTTTTT	8																																																																						8
TAAAAA	6																																																																						6
TAACTA	1																																																																						1
TACCAA	1		1																																																																				2
TACGTA	1																																																																						1
TACGTG	1																																																																						1
TAGAGA	1																																																																						1
TAGTCT		1																																																																					1
TAGTTA	1																																																																						1
TAGTTT	1																																																																						1
TATACA	1																																																																						1
TATACG	1																																																																						1
TATATG	2																																																																						2
TATATT	1																																																																						1
TATCGC	2																																																																						2
TATGGC	1																																																																						1
TATTAA	1																																																																						1
TATTTA	1																																																																						1
TATTTG	2																																																																						2
TATTTT	7																																																																						7
TCAAAT	1																																																																						1
TCAACA	1																																																																						1
TCATCG		1																																																																					1
TCATCT	2																																																																						2
TCATTT			1																																																																				1
TCCACA	1																																																																						1
TCGACG	1																																																																						1
TCGCCA	1																																																																						1
TCGGAT	1																																																																						1
TCGTCA	1	1																																																																					2
TCGTGT	1																																																																						1
TCGTTG	1																																																																						1
TCTAAC	1																																																																						1
TCTCCG	1																																																																						1
TCTCTG	2	1																																																																					3
TCTCTT	2																																																																						2
TCTGCA	1																																																																						1
TCTGTG	1																																																																						1
TCTTCA	1																																																																						1
TCTTCG	2																																																																						2
TCTTTC	3																																																																						3
TGAAAG	1																																																																						1
TGAATT	1																																																																						1
TGACGA	2																																																																						2
TGCCAT	1																																																																						1
TGCCCC	1																																																																						1
TGCCCG		1																																																																					1
TGCCGG	1																																																																						1
TGCGAA	1																																																																						1
TGCGTT	1																																																																						1
TGCTCC	1																																																																						1
TGCTGT	2																																																																						2
TGCTTG	1																																																																						1
TGTCGA	1																																																																						1
TGTCTA	1			1																																																																			2
TGTCTT	1																																																																						1
TGTGCG		1																																																																					1
TGTGTA		1																																																																					1
TGTTGC	2	1																																																																					3
TGTTTT	3																																																																						3
TTAAAA	2																																																																						2
TTAAAC	1																																																																						1
TTAGAG	1																																																																						1
TTATGC	1																																																																						1
TTATTT	3																																																																						3
TTCAAA	1																																																																						1
TTCAAC	1		1																																																																				2
TTCAGT	1																																																																						1
TTCGCC	1																																																																						1
TTCGTC	1																																																																						1
TTCGTG	1																																																																						1
TTCGTT	1																																																																						1
TTCTTT	2																																																																						2
TTGAAA	1																																																																						1
TTGAAC	1																																																																						1
TTGCAT	1																																																																						1
TTGCTG	6																																																																						6
TTGGCA	1																																																																						1
TTGGCG	1																																																																						1
TTGTTT	2	1																																																																					3
TTTACG	1																																																																						1
TTTATA	1																																																																						1
TTTATT	5	1																																																																					6
TTTCTC	1																																																																						1
TTTCTT	3																																																																						3
TTTGAA	2																																																																						2
TTTGAT	1																																																																						1
TTTGTT	5																																																																						5
TTTTAC	1																																																																						1
TTTTAT	5																																																																						5
TTTTCA	1		1																																																																				2
TTTTGC	1																																																																						1
TTTTGG	1																																																																						1
TTTTGT	4																																																																						4
TTTTTA	8																																																																						8
TTTTTC	1																																																																						1
TTTTTG	15	1	1																																																																				17

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	36	20	20	18	15	12	8	9	3	2	4	4	1	2				2	1	3	1		1	2			1	1				1	1						1		1													170
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	41	46	28	25	16	10	7	12	5	11	6	1	3	4	1	4	1	2		1		1																																225
AC/GT	-	-	-	1173	996	775	674	565	385	270	189	97	68	52	38	25	10	8	12	7	8	5	5	3	4	3	6	2	5	1	1	2				1																																			5390
AG/CT	-	-	-	563	376	310	226	176	123	77	58	31	24	9	7	8	6	8	1		3				1	1			3	1												1																													2013
AT/AT	-	-	-	430	290	253	166	133	108	59	38	29	16	8	6	2	1	1	3																																																				1543
CG/CG	-	-	-	111	52	29	8																																																																200
AAC/GTT	-	-	372	241	111	64	34	7	5	2				1																																																									837
AAG/CTT	-	-	142	49	20	8	5	6	2			1	1																																				1				1																	1	237
AAT/ATT	-	-	208	83	61	33	11	4	4	2		1		1																																																									408
ACC/GGT	-	-	84	38	20		7	2	1					1																																																									153
ACG/CGT	-	-	285	139	81	40	27	10	4	3	1	1	1						1																																																				593
ACT/AGT	-	-	44	13	10	2	3		1	2												1																																																	76
AGC/CTG	-	-	228	102	61	31	11	7	2			1																																																											443
AGG/CCT	-	-	37	9	4	2	1																																																																53
ATC/ATG	-	-	129	75	31	11	3	1	1	3																																																													254
CCG/CGG	-	-	283	132	65	28	21	3	1		1		1																																																										535
AAAC/GTTT	-	168	54	17	7	4																																																																	250
AAAG/CTTT	-	25	3	2	3	5	1				1																																																												40
AAAT/ATTT	-	145	42	13	6	1		1																																																															208
AACC/GGTT	-	4	1				1																																																																6
AACG/CGTT	-	62	26	15	8	7	1	2		1		1																																																											123
AACT/AGTT	-	3																																																																					3
AAGC/CTTG	-			2																																																																			2
AAGG/CCTT	-	4	1		2				2																																																														9
AATC/ATTG	-	11	4	2		1	1			1																																																													20
AATG/ATTC	-	14	3	3		1			1																																																														22
AATT/AATT	-	2																																																																					2
ACAG/CTGT	-	28	11		4		1																																																																44
ACAT/ATGT	-	18	5	6	1	2	1																																																																33
ACCC/GGGT	-	8	1	1																																																																			10
ACCG/CGGT	-	12	11	4	1	1	2				1																																																												32
ACCT/AGGT	-	3	1																			1																																																	5
ACGC/CGTG	-	43	23	4	1		1																																																																72
ACGG/CCGT	-	32	15	7	1		2																																																																57
ACGT/ACGT	-	9	3																																																																				12
ACTC/AGTG	-	3	1		1																																																																		5
ACTG/AGTC	-	12	2	1	1																																																																		16
AGAT/ATCT	-	12	8	2	1	1																																																																	24
AGCC/CTGG	-	23	7	1		2			1																																																														34
AGCG/CGCT	-	23	11	3																																																																			37
AGCT/AGCT	-	1																																																																					1
AGGC/CCTG	-	18	3	4	3	1																																																																	29
AGGG/CCCT	-	4																																																																					4
ATCC/ATGG	-	26	14	8		7		1														1																																																	57
ATCG/ATCG	-	3		2																																																																			5
ATGC/ATGC	-		2			1																																																																	3
CCCG/CGGG	-	16	4	3																																																																			23
CCGG/CCGG	-	16	4																																																																				20
AAAAC/GTTTT	379	92	12	5	1		1																																																																490
AAAAG/CTTTT	63	1	1																																																																				65
AAAAT/ATTTT	234	30	19	6		3	1																																																																293
AAACC/GGTTT	7		1																																																																				8
AAACG/CGTTT	65	28	2																																																																				95
AAACT/AGTTT	8	5	2																																																																				15
AAAGC/CTTTG	7	1																																																																					8
AAAGG/CCTTT		1																																																																					1
AAAGT/ACTTT	1																																																																						1
AAATC/ATTTG	22	3	1																																																																				26
AAATG/ATTTC	28	2	1																																																																				31
AAATT/AATTT	13	1																																																																					14
AACAC/GTGTT	8	1	1																																																																				10
AACAG/CTGTT	5		2																																																																				7
AACAT/ATGTT	4		1																																																																				5
AACCC/GGGTT	1																																																																						1
AACCG/CGGTT	1																																																																						1
AACCT/AGGTT	63	19	6	5	3	4	1	5	4	1		1				1	2				1																																																		116
AACGC/CGTTG	7																																																																						7
AACGG/CCGTT	6		1																																																																				7
AACGT/ACGTT	5																																																																						5
AACTC/AGTTG	3																																																																						3
AACTG/AGTTC	5	2																																																																					7
AACTT/AAGTT	2	1																																																																					3
AAGAC/CTTGT	2																																																																						2
AAGAG/CTCTT	6																																																																						6
AAGAT/ATCTT	12	4	4																																																																				20
AAGCC/CTTGG	1																																																																						1
AAGCG/CGCTT	3																																																																						3
AAGGC/CCTTG	3																																																																						3
AAGGT/ACCTT		1	1																																																																				2
AAGTC/ACTTG	15	1																																																																					16
AAGTG/ACTTC	3																																																																						3
AATAG/ATTCT	4																																																																						4
AATAT/ATATT	13	4																																																																					17
AATCC/ATTGG	4	1																																																																					5
AATCG/ATTCG	11	1																																																																					12
AATCT/AGATT	8	3	1																																																																				12
AATGC/ATTGC	11																																																																						11
AATGG/ATTCC	4																																																																						4
AATGT/ACATT	4																																																																						4
AATTC/AATTG	22	2																																																																					24
ACACC/GGTGT	2																																																																						2
ACACG/CGTGT	5																																																																						5
ACACT/AGTGT	2	1																																																																					3
ACAGC/CTGTG	6	1																																																																					7
ACAGG/CCTGT	1																																																																						1
ACAGT/ACTGT	196	1	1																																																																				198
ACATC/ATGTG	2																																																																						2
ACATG/ATGTC	3																																																																						3
ACCAT/ATGGT	8									1																																																													9
ACCCC/GGGGT	3	1																																																																					4
ACCCG/CGGGT	1																																																																						1
ACCGC/CGGTG	4																																																																						4
ACCGG/CCGGT	3																																																																						3
ACCGT/ACGGT	1	1																																																																					2
ACCTG/AGGTC		1																																																																					1
ACGAG/CGTCT	7	1																																																																					8
ACGAT/ATCGT	1			1																																																																			2
ACGCC/CGTGG	2	1	1																																																																				4
ACGCG/CGCGT	6																																																																						6
ACGCT/AGCGT	2																																																																						2
ACGGC/CCGTG	3																																																																						3
ACGGG/CCCGT	5	1																																																																					6
ACGTC/ACGTG	7	1																																																																					8
ACTAG/AGTCT	3																																																																						3
ACTAT/AGTAT	23																																																																						23
ACTCG/AGTCG	9								1	1																																																													11
ACTCT/AGAGT	2																																																																						2
ACTGC/AGTGC	1																																																																						1
ACTGG/AGTCC	1	1																																																																					2
AGAGC/CTCTG	3																																																																						3
AGATG/ATCTC	2																																																																						2
AGCAT/ATGCT	1																																																																						1
AGCCC/CTGGG	3																																																																						3
AGCCG/CGGCT	2	2																																																																					4
AGCCT/AGGCT	1																																																																						1
AGCGC/CGCTG	5	1																																																																					6
AGCTC/AGCTG	2																																																																						2
AGGAT/ATCCT	2																																																																						2
AGGCC/CCTGG	5	1																																																																					6
AGGCG/CCTCG	2																																																																						2
AGGGC/CCCTG	1			1																																																																			2
AGGGG/CCCCT	2																																																																						2
ATATC/ATATG		2	1																																																																				3
ATCCC/ATGGG	1																																																																						1
ATCCG/ATCGG	3	1																																																																					4
ATCGC/ATGCG	4	1																																																																					5
ATGCC/ATGGC	3				1																																																																		4
CCCCG/CGGGG	3																																																																						3
CCCGG/CCGGG	5	1																																																																					6
CCGCG/CGCGG	2																																																																						2
AAAAAC/GTTTTT	76	4	1																																																																				81
AAAAAG/CTTTTT	17																																																																						17
AAAAAT/ATTTTT	62	3																																																																					65
AAAACC/GGTTTT	2																																																																						2
AAAACG/CGTTTT	3	2																																																																					5
AAAACT/AGTTTT	1																																																																						1
AAAAGC/CTTTTG	3	1																																																																					4
AAAAGG/CCTTTT	1																																																																						1
AAAAGT/ACTTTT	1		1																																																																				2
AAAATC/ATTTTG	8																																																																						8
AAAATG/ATTTTC	3		2																																																																				5
AAAATT/AATTTT	2																																																																						2
AAACAG/CTGTTT	1																																																																						1
AAACGC/CGTTTG	2																																																																						2
AAACGT/ACGTTT	3																																																																						3
AAACTG/AGTTTC	2																																																																						2
AAACTT/AAGTTT	2																																																																						2
AAAGAC/CTTTGT	1																																																																						1
AAAGAG/CTCTTT	8																																																																						8
AAAGAT/ATCTTT	1																																																																						1
AAAGCC/CTTTGG	2																																																																						2
AAAGCG/CGCTTT	2																																																																						2
AAAGGC/CCTTTG	3																																																																						3
AAAGTG/ACTTTC	2																																																																						2
AAATAC/ATTTGT	2																																																																						2
AAATAT/ATATTT	3																																																																						3
AAATCC/ATTTGG	27	6	8																																																																				41
AAATCG/ATTTCG	1	1																																																																					2
AAATCT/AGATTT	1																																																																						1
AAATGC/ATTTGC	1																																																																						1
AAATGG/ATTTCC	1																																																																						1
AAATTC/AATTTG	5																																																																						5
AAATTG/AATTTC	2																																																																						2
AACAAG/CTTGTT	1																																																																						1
AACAAT/ATTGTT	1																																																																						1
AACACG/CGTGTT	2																																																																						2
AACAGC/CTGTTG	24	1	1																																																																				26
AACATC/ATGTTG	1		1																																																																				2
AACCAC/GGTTGT	2																																																																						2
AACCCT/AGGGTT	1																																																																						1
AACCGT/ACGGTT	1																																																																						1
AACCTG/AGGTTC	1																																																																						1
AACGAC/CGTTGT	3	1																																																																					4
AACGAG/CGTTCT	1	2																																																																					3
AACGCC/CGTTGG	1																																																																						1
AACGCG/CGCGTT		1																																																																					1
AACGCT/AGCGTT	1																																																																						1
AACGGC/CCGTTG	6		1	1																																																																			8
AACGGG/CCCGTT	1																																																																						1
AACGTC/ACGTTG	1																																																																						1
AACGTG/ACGTTC	2																																																																						2
AACTAG/AGTTCT	2																																																																						2
AACTAT/AGTTAT	2																																																																						2
AACTCT/AGAGTT	3																																																																						3
AACTTC/AAGTTG	11	4	1																																																																				16
AACTTG/AAGTTC	2	1																																																																					3
AAGACG/CGTCTT	6		1																																																																				7
AAGACT/AGTCTT	2	2																																																																					4
AAGAGG/CCTCTT	1																																																																						1
AAGATC/ATCTTG	1																																																																						1
AAGATG/ATCTTC	3																																																																						3
AAGCAC/CTTGTG	1																																																																						1
AAGCAG/CTGCTT		1																																																																					1
AAGCAT/ATGCTT	2																																																																						2
AAGCCG/CGGCTT	5																																																																						5
AAGCGG/CCGCTT	1																																																																						1
AAGCTG/AGCTTC	1																																																																						1
AAGGAC/CCTTGT		1																																																																					1
AAGGAG/CCTTCT	1																																																																						1
AAGGCG/CCTTCG	1																																																																						1
AAGGTG/ACCTTC	2																																																																						2
AAGTAC/ACTTGT	1																																																																						1
AAGTGC/ACTTGC	2			1										1																																																									4
AATACC/ATTGGT	2		1																																																																				3
AATACT/AGTATT	1																																																																						1
AATATG/ATATTC	1																																																																						1
AATATT/AATATT	1																																																																						1
AATCAT/ATGATT	1																																																																						1
AATCCG/ATTCGG	1																																																																						1
AATCGC/ATTGCG	1																																																																						1
AATGAT/ATCATT	1																																																																						1
AATGCC/ATTGGC	1																																																																						1
AATGCG/ATTCGC	3																																																																						3
AATGCT/AGCATT	1																																																																						1
AATGGC/ATTGCC	1																																																																						1
AATGTG/ACATTC	2																																																																						2
AATTAT/AATTAT	1																																																																						1
ACACAG/CTGTGT	5	1																																																																					6
ACACAT/ATGTGT	1	1								1											1																																																		4
ACACGC/CGTGTG	6	1																																																																					7
ACACGG/CCGTGT	1																																																																						1
ACACGT/ACGTGT	1																																																																						1
ACACTC/AGTGTG	1																																																																						1
ACACTG/AGTGTC	2					1	1						1																																																										5
ACAGAG/CTCTGT	3	1																																																																					4
ACAGCC/CTGTGG	2																																																																						2
ACAGGC/CCTGTG	1																																																																						1
ACATAG/ATGTCT	3			1																																																																			4
ACATAT/ATATGT	4																																																																						4
ACATCC/ATGTGG	1																																																																						1
ACATCG/ATGTCG	3	1			1																																																																		5
ACATCT/AGATGT	1																																																																						1
ACATGG/ATGTCC	1																																																																						1
ACCACG/CGTGGT	1																																																																						1
ACCACT/AGTGGT	1																																																																						1
ACCAGC/CTGGTG	2		1																																																																				3
ACCAGT/ACTGGT	1																																																																						1
ACCATC/ATGGTG	3																																																																						3
ACCCCT/AGGGGT	1																																																																						1
ACCGAG/CGGTCT	1																																																																						1
ACCGCC/CGGTGG	2																																																																						2
ACCGGC/CCGGTG	3																																																																						3
ACCGTG/ACGGTC	1																																																																						1
ACCTGC/AGGTGC	1																																																																						1
ACGACT/AGTCGT		1																																																																					1
ACGAGG/CCTCGT	2																																																																						2
ACGATC/ATCGTG	1																																																																						1
ACGATG/ATCGTC	8	2																																																																					10
ACGCAT/ATGCGT	1																																																																						1
ACGCCG/CGGCGT	5	1																																																																					6
ACGCGG/CCGCGT	1																																																																						1
ACGCTG/AGCGTC	1																																																																						1
ACGGAG/CCGTCT	1																																																																						1
ACGGCG/CCGTCG	4	1	1																																																																				6
ACGGCT/AGCCGT	1																																																																						1
ACGGGC/CCCGTG		1																																																																					1
ACGTAT/ACGTAT	2																																																																						2
ACGTCC/ACGTGG	4																																																																						4
ACGTCG/ACGTCG	4																																																																						4
ACTATC/AGTGAT	1																																																																						1
ACTCAG/AGTCTG	1																																																																						1
ACTCCT/AGGAGT	1																																																																						1
ACTCGC/AGTGCG	1																																																																						1
ACTGCC/AGTGGC	4																																																																						4
ACTGCG/AGTCGC	2																																																																						2
ACTGCT/AGCAGT	1	1																																																																					2
ACTGGC/AGTGCC	1		1																																																																				2
AGAGAT/ATCTCT	3																																																																						3
AGAGCG/CGCTCT	1																																																																						1
AGATAT/ATATCT	1																																																																						1
AGATGC/ATCTGC	1																																																																						1
AGCAGG/CCTGCT	2																																																																						2
AGCCAT/ATGGCT	1																																																																						1
AGCCGC/CGGCTG	3	1																																																																					4
AGCCGG/CCGGCT	1																																																																						1
AGCGAT/ATCGCT	2																																																																						2
AGCGCC/CGCTGG	1	1																																																																					2
AGCGGC/CCGCTG	5	1			1																																																																		7
AGCTCC/AGCTGG	2																																																																						2
AGGCCG/CCTCGG	1																																																																						1
AGGCGC/CCTGCG	1																																																																						1
AGGCGG/CCGCCT	2																																																																						2
AGGGGC/CCCCTG	1																																																																						1
ATCATG/ATCATG	1																																																																						1
ATCCGC/ATGCGG		1																																																																					1
ATCGCC/ATGGCG	4					1																																																																	5
ATCGGC/ATGCCG	1																																																																						1
ATGGCC/ATGGCC	2																																																																						2
CCGGCG/CCGGCG	2																																																																						2
