Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-22/megassr/results/hub_GCA_057747695.1/fasta/hub_GCA_057747695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           1682121
Total number of identified SSRs:                 9
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
TGG	-	-	1		1
AAAGC	1				1
AGTTA	1				1
TATTT	1				1
TTTTG	1				1
ATTTAT	1				1
CATAAG			1		1
TAGCAA		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
ACC/GGT	-	-	1		1
AAAAC/GTTTT	1				1
AAAAT/ATTTT	1				1
AAAGC/CTTTG	1				1
AACTT/AAGTT	1				1
AAATAT/ATATTT	1				1
AAGCAT/ATGCTT			1		1
AATAGC/ATTGCT		1			1
