Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-18/megassr/results/hub_GCA_056632975.1/fasta/hub_GCA_056632975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           17670646
Total number of identified SSRs:                 1213
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    83


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	23
2	161
3	360
4	61
5	178
6	430

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1	1	2	1	1		1																																											8
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2							1																					1																								4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1		1			1	1						1																					1																		7
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1		1				1																																													4
AC	-	-	-	3																																																																		3
AG	-	-	-	14	2	2	1			1	1																																																											21
AT	-	-	-	12	7	3	1	2																																																														25
CA	-	-	-	3		1					1																																																											5
CG	-	-	-	4																																																																		4
CT	-	-	-	14	3		1																																																															18
GA	-	-	-	29	4	3																																																																36
GC	-	-	-	1	1																																																																	2
GT	-	-	-	4		1																																																																5
TA	-	-	-	5	1	1	2																																																															9
TC	-	-	-	26	3		1																																																															30
TG	-	-	-	3																																																																		3
AAC	-	-	2																																																																			2
AAG	-	-	24	6			1																																																															31
AAT	-	-	1																																																																		1	2
ACA	-	-	1																																																																			1
ACC	-	-	4																																																																			4
ACG	-	-	2					1																																																														3
ACT	-	-	1																																																																			1
AGA	-	-	7																																																																			7
AGC	-	-	5	1		1																																																																7
AGG	-	-	2	2	2			1																																																														7
AGT	-	-	1																																																																			1
ATA	-	-	1																																																																			1
ATC	-	-	1	1		1																																																																3
ATG	-	-	4	1	2																																																																	7
ATT	-	-	2		1																																																																	3
CAA	-	-	5				1																																																															6
CAC	-	-	2	1																																																																		3
CAG	-	-	7	4																																																																		11
CAT	-	-	3	2	2	1	1																																																															9
CCA	-	-	7	2	1																																																																	10
CCG	-	-	4	6		1																																																																11
CCT	-	-	2			1																																																																3
CGA	-	-	2				1																																																															3
CGC	-	-	2					1	1																																																													4
CGG	-	-	1	3																																																																		4
CGT	-	-	4	1			1																																																															6
CTC	-	-	1		1																																																																	2
CTG	-	-	3	3	1																																																																	7
CTT	-	-	12	7	3																																																																	22
GAA	-	-	9	10														1																																																				20
GAC	-	-	8	3																																																																		11
GAG	-	-	5	5																																																																		10
GAT	-	-	3	4																																																																		7
GCA	-	-	4	1	1																																																																	6
GCC	-	-	3																																																																			3
GCT	-	-	5			1		1																																																														7
GGA	-	-	11	1	1																																																																	13
GGC	-	-	2																																																																			2
GGT	-	-	5	2	1	1																																																																9
GTA	-	-	3																																																																			3
GTC	-	-	4	1																																																																		5
GTG	-	-	2						1																																																													3
GTT	-	-	1	2	1																																																																	4
TAC	-	-	1	1																																																																		2
TAG	-	-	1	1																																																																		2
TCA	-	-	2	1	1																																																																	4
TCC	-	-	6	1	1																																																																	8
TCG	-	-	4	1																																																																		5
TCT	-	-	7	2	1		1																																																															11
TGA	-	-	1	1																																																																		2
TGC	-	-	6		1		2																																																															9
TGG	-	-		1																																																																		1
TGT	-	-	10	1	1									1																																																								13
TTC	-	-	12		1																																																																	13
TTG	-	-	5		1																																																																	6
AAAG	-	1	1																																																																			2
AAGA	-	1	1																																																																			2
ACGT	-	1																																																																				1
AGAA	-	1																																																																				1
AGGA	-	1																																																																				1
AGTG	-	1																																																																				1
CAAG	-																1																																																					1
CAGA	-	1																																																																				1
CAGC	-	1	1																																																																			2
CAGG	-	1																																																																				1
CATC	-	1																																																																				1
CATG	-	1																																																																				1
CCAG	-	1																																																																				1
CCAT	-	1	1																																																																			2
CCCA	-	1																																																																				1
CCCG	-	1																																																																				1
CGCA	-				1																																																																	1
CGGT	-		1																																																																			1
CGTA	-		2																																																																			2
CTCA	-	1		1																																																																		2
CTGG	-	1																																																																				1
CTTG	-					1																																																																1
GAAG	-	1																																																																				1
GAAT	-	1																																																																				1
GAGG	-	1																																																																				1
GATC	-	1																																																																				1
GATG	-	1																																																																				1
GCCA	-	1																																																																				1
GCTC	-		1																																																																			1
GCTG	-	1	1																																																																			2
GGAT	-	1																																																																				1
GTAA	-				1																																																																	1
GTAC	-	1	1																																																																			2
GTAT	-			1																																																																		1
GTGA	-		1																																																																			1
TACG	-	2	1																																																																			3
TATC	-	1																																																																				1
TATG	-		1																																																																			1
TCAA	-	1																																																																				1
TCCA	-	1																																																																				1
TCGA	-	1																																																																				1
TCGT	-		1																																																																			1
TCTG	-	1																																																																				1
TGAG	-		1																																																																			1
TGGA	-	2																																																																				2
TGGC	-	1																																																																				1
TTCC	-	1																																																																				1
TTCT	-	1	1		1																																																																	3
AAAAC	1																																																																					1
AAAAG	3																																																																					3
AAAAT	1																																																																					1
AAAGA	1																																																																					1
AAAGG	1																																																																					1
AAATA	1																																																																					1
AAGAA	3																																																																					3
AAGAG	1																																																																					1
AAGAT		1																																																																				1
AAGCC	1																																																																					1
AAGGG	1																																																																					1
AATGT	1																																																																					1
AATTA	1																																																																					1
ACAAA	1																																																																					1
ACACG	1																																																																					1
ACCAC	1																																																																					1
ACGCC		1																																																																				1
ACGCG	1																																																																					1
AGAAA	1																																																																					1
AGAAG	1																																																																					1
AGACG		1																																																																				1
AGAGA	2																																																																					2
AGATA	2																																																																					2
AGCCA		1																																																																				1
AGCGT	1																																																																					1
AGGCG	1																																																																					1
AGGGA	1																																																																					1
AGGGG	1																																																																					1
AGTAG	1																																																																					1
ATACT	1																																																																					1
ATCAA	1																																																																					1
ATTAT	1																																																																					1
ATTTG	1																																																																					1
CAAAT	1																																																																					1
CACCA	1																																																																					1
CAGAT	2																																																																					2
CAGCC	1																																																																					1
CATAG	1																																																																					1
CATAT	1																																																																					1
CATGT	1																																																																					1
CCAGA	1																																																																					1
CCATA	1																																																																					1
CCCCG	3																																																																					3
CCCCT	1																																																																					1
CCCGC	1																																																																					1
CCCTT	2																																																																					2
CCGAC	1																																																																					1
CGAAG	1																																																																					1
CGACC	1																																																																					1
CGAGA	1																																																																					1
CGCCA		1																																																																				1
CGCCC	1		1																																																																			2
CGCCG	1																																																																					1
CGCGC	1																																																																					1
CGCGT	1																																																																					1
CGCTA	1																																																																					1
CGGGC	1																																																																					1
CGGGG	1																																																																					1
CGGTG	1																																																																					1
CGTAC	1																																																																					1
CGTCT	1																																																																					1
CGTTT	1																																																																					1
CTCAT	1																																																																					1
CTCCG	1																																																																					1
CTCCT	1																																																																					1
CTCTC	1																																																																					1
CTCTT	2			1																																																																		3
CTGCG	1																																																																					1
CTTAG	1																																																																					1
CTTAT	1																																																																					1
CTTCC			1																																																																			1
CTTCT	1																																																																					1
CTTTC	2																																																																					2
GAAAA	3	1																																																																				4
GAAAC	1																																																																					1
GAAAG	1																																																																					1
GAAGA	1																																																																					1
GAATG	1																																																																					1
GACGC	2																																																																					2
GAGAC	1																																																																					1
GAGAG	1																																																																					1
GAGGA	1																																																																					1
GAGGG		1																																																																				1
GATAA	1																																																																					1
GCATA	1																																																																					1
GCCCC		1																																																																				1
GCGGC	1																																																																					1
GCGGG	1																																																																					1
GCGGT	1																																																																					1
GCGTC	1																																																																					1
GCTGG	2																																																																					2
GGAGA	1																																																																					1
GGAGG	1																																																																					1
GGCCT	1																																																																					1
GGGAT						1																																																																1
GGGGA	2																																																																					2
GGGGC	4																																																																					4
GGTCT	1																																																																					1
GTACG	1																																																																					1
GTATA	1																																																																					1
GTCAA	1																																																																					1
GTCGA	1																																																																					1
GTCGC	2																																																																					2
GTCTC	1																																																																					1
GTCTT			1																																																																			1
GTGGG	1																																																																					1
GTGTG		1																																																																				1
GTTCT	1							1																																																														2
GTTTT	1																																																																					1
TATCT	1																																																																					1
TCACA	1																																																																					1
TCCAC	1																																																																					1
TCCAG	1																																																																					1
TCCCC	1																																																																					1
TCCGA	1																																																																					1
TCTAT	1																																																																					1
TCTGT			1																																																																			1
TCTTC	1																																																																					1
TCTTT	3																																																																					3
TGAAA	1																																																																					1
TGATG	1																																																																					1
TGCCA	2																																																																					2
TGCGT	1																																																																					1
TGCTG	1																																																																					1
TGGAC	1																																																																					1
TGGGA	1																																																																					1
TGGGC	1																																																																					1
TGGGT	2																																																																					2
TGTTG		1																																																																				1
TGTTT	1		1																																																																			2
TTATC	1																																																																					1
TTCTC	2																																																																					2
TTCTT	4																																																																					4
TTGAT	1																																																																					1
TTTCT	3																																																																					3
TTTGT	1	1																																																																				2
TTTTC	4					1																																																																5
AAAAAC	1																																																																					1
AAAAAG	1																																																																					1
AAAACA	1																																																																					1
AAAATC		1																																																																				1
AAACAA		1								1																																																												2
AAAGAA	1																																																																					1
AAAGAG	2																																																																					2
AACAGC						1																																																																1
AACCCC	1																																																																					1
AACCCG	1																																																																					1
AACGCA	1																																																																					1
AAGAAA	1																																																																					1
AAGACA		1																																																																				1
AAGAGA	1																																																																					1
AAGAGG		1																																																																				1
AAGGCA	1																																																																					1
AATGGG	2																																																																					2
ACACAA	1																																																																					1
ACAGAC	1																																																																					1
ACCAGC	1			1																																																																		2
ACCCCC	1	1																																																																				2
ACCGGC	1																																																																					1
ACCTGC	2																																																																					2
ACGACT	1																																																																					1
ACGAGG			1																																																																			1
ACGAGT	1																																																																					1
ACGCCG	2																																																																					2
ACGGGC	1																																																																					1
ACGTCT	1																																																																					1
ACGTTC	1																																																																					1
ACTCCC	1																																																																					1
ACTCGT	1																																																																					1
AGAGGA	1																																																																					1
AGAGTC								1																																																														1
AGATGA	1																																																																					1
AGCACC		1											1																																																									2
AGCACG	2																																																																					2
AGCCCC	1																																																																					1
AGGGCA	1																																																																					1
AGGGGA	1																																																																					1
AGGTTG	1																																																																					1
AGTACA	1																																																																					1
AGTACG	1			1																																																																		2
AGTCTC	1																																																																					1
AGTGAA	1																																																																					1
AGTGAG	1																																																																					1
ATACCC	1																																																																					1
ATCTCC	1																																																																					1
ATGAAC	1																																																																					1
ATGAGG											1																																																											1
ATGGGA			1																																																																			1
ATGGGT	1																																																																					1
ATTTTT	2																																																																					2
CAAAAA	2																																																																					2
CAACAG	1																																																																					1
CAAGCC	2																																																																					2
CAAGGG	1																																																																					1
CAAGTG				1																																																																		1
CACCCA	1																																																																					1
CACCCG		1																																																																				1
CAGCAA	1		1																																																																			2
CAGCCC	2																																																																					2
CAGCGC		1																																																																				1
CAGGCT										1																																																												1
CAGTCA	1																																																																					1
CAGTGC	1																																																																					1
CAGTTG	1																																																																					1
CATCCT	1																																																																					1
CATCGC	1																																																																					1
CATCGG	1																																																																					1
CATGCC		1																																																																				1
CCAAAC	2																																																																					2
CCAACA	1																																																																					1
CCAACC	1																																																																					1
CCACGC		1																																																																				1
CCACGG	1																																																																					1
CCACTT	1																																																																					1
CCAGCA			1	1																																																																		2
CCAGGC	1																																																																					1
CCATCA	1	1	1																																																																			3
CCATCC	1	1																																																																				2
CCCAAA			1																																																																			1
CCCAAC	1																																																																					1
CCCAAT		1																																																																				1
CCCACG	2																																																																					2
CCCAGC	1																																																																					1
CCCATG	1																																																																					1
CCCATT	1																																																																					1
CCCCAC		1																																																																				1
CCCCAG	1																																																																					1
CCCCCA	1	1																																																																				2
CCCCCT	2																																																																					2
CCCCGA	2																																																																					2
CCCCGT		1																																																																				1
CCCCTG	2																																																																					2
CCCGAC	1																																																																					1
CCCGCG	1																																																																					1
CCCGTC		1																																																																				1
CCCTCG	1																																																																					1
CCCTGC	1	1																																																																				2
CCGAAC		1																																																																				1
CCGACG		1			1																																																																	2
CCGCCA	1																																																																					1
CCGCCC		1																																																																				1
CCGCGC	1																																																																					1
CCGGCA	1																																																																					1
CCGGGG	1																																																																					1
CCGGGT	1																																																																					1
CCGGTG	1																																																																					1
CCGTCC	1																																																																					1
CCGTGT	1																																																																					1
CCTCCA	2	1																																																																				3
CCTCGC	1																																																																					1
CCTCTT	1																																																																					1
CCTGAG				1																																																																		1
CCTTCC	1																																																																					1
CCTTGC	1																																																																					1
CGACAA	1																																																																					1
CGACGT	1																																																																					1
CGAGTA	1																																																																					1
CGAGTC	1																																																																					1
CGCACG	1																																																																					1
CGCATG		1																																																																				1
CGCCAT	1																																																																					1
CGCCCC	1																																																																					1
CGCCCG	2																																																																					2
CGCCGA	3																																																																					3
CGCCTC	1																																																																					1
CGCGAG	1																																																																					1
CGCGCC	1																																																																					1
CGCGTC	1																																																																					1
CGCTGG	3																																																																					3
CGGCGA		1																																																																				1
CGGCTT	1																																																																					1
CGGGAA	1																																																																					1
CGGGCG	2																																																																					2
CGGGGC		1																																																																				1
CGGGGG	1																																																																					1
CGGTGA		1																																																																				1
CGGTGC	1																																																																					1
CGTCGG	2	1																																																																				3
CGTCTT	1																																																																					1
CTAGCG	1																																																																					1
CTCACT	2	1																																																																				3
CTCATC	2																																																																					2
CTCCCC	7	2																																																																				9
CTCCGA			1																																																																			1
CTCCTT			1																																																																			1
CTCGGG	1																																																																					1
CTCGTA	2																																																																					2
CTCTTT	2																																																																					2
CTGCAC	1																																																																					1
CTGCCT	1																																																																					1
CTGGCG	1																																																																					1
CTGGGA	1																																																																					1
CTGGGT	1																																																																					1
CTGTCT	1																																																																					1
CTGTGG		1																																																																				1
CTGTTG	1																																																																					1
CTTCCC	2																																																																					2
CTTCCT	2																																																																					2
CTTGCC	1																																																																					1
CTTGTG	1																																																																					1
CTTTCT	1																																																																					1
GAAAAG	1																																																																					1
GAAAAT		1																																																																				1
GAAAGA	1			1																																																																		2
GAACGT	1																																																																					1
GAAGAC	1			1																																																																		2
GAAGAG	3															1																																																						4
GAAGGA	1	1																																																																				2
GAAGGT		1																																																																				1
GACGAA	1																																																																					1
GACGCC		2																																																																				2
GACGGG	1																																																																					1
GACTCG	1																																																																					1
GAGAAA	1																																																																					1
GAGCAC	1																																																																					1
GAGGAA	2																																																																					2
GAGGAT	2	1																																																																				3
GAGGCA	1																																																																					1
GAGGGG	2																																																																					2
GAGGGT	1																																																																					1
GAGGTG	2																																																																					2
GAGTAC	2																																																																					2
GAGTCA	1																																																																					1
GAGTCT	1																																																																					1
GAGTGA		1																																																																				1
GATAAG	1																																																																					1
GATGAC		1																																																																				1
GATGAG	1	2																																																																				3
GCACCT	1																																																																					1
GCAGAG										1																																																												1
GCAGAT	1																																																																					1
GCATCA		1																																																																				1
GCCACC	2																																																																					2
GCCCAG	1																																																																					1
GCCCCC	1																																																																					1
GCCCCG	1																																																																					1
GCCGAC	1		1																																																																			2
GCCGGC	1																																																																					1
GCCGGG	1																																																																					1
GCCGTT	1																																																																					1
GCCTGA	1																																																																					1
GCGAGG	1																																																																					1
GCGCCC	1																																																																					1
GCGCGG	1																																																																					1
GCGGGA	1																																																																					1
GCGGTG	1																																																																					1
GCTGCG	1																																																																					1
GCTGGC	1																																																																					1
GCTGGT		1																																																																				1
GCTTGG	2																																																																					2
GCTTTG	1																																																																					1
GGAAGA	1																																																																					1
GGACAA	1		1																																																																			2
GGACGA	1																																																																					1
GGACGG			1																																																																			1
GGAGGG	1																																																																					1
GGATGA	1																																																																					1
GGATTT			1																																																																			1
GGCAAG	1																																																																					1
GGCACT	1																																																																					1
GGCAGG	1																																																																					1
GGCCCC		1																																																																				1
GGCCGG	1																																																																					1
GGCGGG	2	1	1																																																																			4
GGCGTG	1																																																																					1
GGCTCC		1																																																																				1
GGCTGG	1																																																																					1
GGCTTT	1																																																																					1
GGGAGA	2																																																																					2
GGGAGC	1																																																																					1
GGGAGT	1																																																																					1
GGGATG	1																																																																					1
GGGCAA	1																																																																					1
GGGCCG	1																																																																					1
GGGCGC		1																																																																				1
GGGCGG	1																																																																					1
GGGGCG	3																																																																					3
GGGGGA	1	2																																																																				3
GGGGGT	1																																																																					1
GGGTGC	1	1																																																																				2
GGTGCG	1																																																																					1
GGTGCT	1																																																																					1
GGTGGA	1																																																																					1
GGTGGC	2																																																																					2
GGTGTG		1																																																																				1
GGTGTT	1																																																																					1
GGTTGC	1																																																																					1
GGTTTG	1																																																																					1
GTACGG	1																																																																					1
GTACTC	7	1																																																																				8
GTCAAA	1																																																																					1
GTCGGC	1																																																																					1
GTCGGG	1			1																																																																		2
GTCTGC		1																																																																				1
GTCTGT	1																																																																					1
GTGAGA	1																																																																					1
GTGGAG	1																																																																					1
GTTCTG	1																																																																					1
GTTTGG	1																																																																					1
TACATC	1																																																																					1
TACCGG	1																																																																					1
TATATC	1																																																																					1
TATGAT	1																																																																					1
TCAACA	1																																																																					1
TCAGAC	1																																																																					1
TCAGAG	1																																																																					1
TCAGGG	1																																																																					1
TCATCG	1																																																																					1
TCATCT	1																																																																					1
TCCCCA				1																																																																		1
TCCCCC	1																																																																					1
TCCCCG	1																																																																					1
TCCCGG	1																																																																					1
TCCCTC		1																																																																				1
TCCTCT	4																																																																					4
TCCTTC	1																																																																					1
TCCTTG	1																																																																					1
TCGCCA	1																																																																					1
TCGGAG	1																																																																					1
TCGGAT	1																																																																					1
TCGGCG		1																																																																				1
TCGGGT	1																																																																					1
TCGTAC		1																																																																				1
TCGTCA	2																																																																					2
TCGTCC	2																																																																					2
TCGTTC	1																																																																					1
TCTCAC	1																																																																					1
TCTCCT	1																																																																					1
TCTCTG	1																																																																					1
TCTCTT	1																																																																					1
TCTGAT	1																																																																					1
TCTGGC		1																																																																				1
TCTGTC	1																																																																					1
TCTTCC		1																																																																				1
TCTTCG	1																																																																					1
TCTTTC		1																																																																				1
TGACCT	1																																																																					1
TGAGAG	1																																																																					1
TGAGCC		1																																																																				1
TGATGG	1																																																																					1
TGCCCT	1																																																																					1
TGCCGT	1																																																																					1
TGCGCC	1																																																																					1
TGCGGG	1																																																																					1
TGGAAG	1																																																																					1
TGGCCG	1																																																																					1
TGGCTC			1																																																																			1
TGGGAA				1																																																																		1
TGGGAC				1																																																																		1
TGGGTC		1																																																																				1
TGGGTT			1																																																																			1
TGTCTC												1																																																										1
TGTTGC	6																																																																					6
TGTTGG	1																																																																					1
TTCATC		1																																																																				1
TTCCCC	1																																																																					1
TTCGGC	1																																																																					1
TTCGTC	1																																																																					1
TTCTCA	1																																																																					1
TTCTCC	1																																																																					1
TTGCTG	1																																																																					1
TTGGAG	1																																																																					1
TTGTGC		1																																																																				1
TTGTTT	1																																																																					1
TTTCTC	1																																																																					1
TTTGGT	1																																																																					1
TTTTCC	1																																																																					1
TTTTGT	1																																																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1		2	1	2	1	2		1																																											12
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1		1			1	2						1															1						1																		11
AC/GT	-	-	-	13		2					1																																																											16
AG/CT	-	-	-	83	12	5	3			1	1																																																											105
AT/AT	-	-	-	17	8	4	3	2																																																														34
CG/CG	-	-	-	5	1																																																																	6
AAC/GTT	-	-	24	3	3		1							1																																																								32
AAG/CTT	-	-	71	25	5		2											1																																																				104
AAT/ATT	-	-	4		1																																																																1	6
ACC/GGT	-	-	20	6	2	1			1																																																													30
ACG/CGT	-	-	24	6			2	1																																																														33
ACT/AGT	-	-	7	2																																																																		9
AGC/CTG	-	-	30	9	3	2	2	1																																																														47
AGG/CCT	-	-	27	9	5	1		1																																																														43
ATC/ATG	-	-	14	10	5	2	1																																																															32
CCG/CGG	-	-	12	9		1		1	1																																																													24
AAAG/CTTT	-	4	3		1																																																																	8
AACG/CGTT	-		1																																																																			1
AAGC/CTTG	-					1											1																																																					2
AAGG/CCTT	-	3																																																																				3
AAGT/ACTT	-				1																																																																	1
AATC/ATTG	-	1																																																																				1
AATG/ATTC	-	1																																																																				1
ACAG/CTGT	-	2																																																																				2
ACAT/ATGT	-		1	1																																																																		2
ACCC/GGGT	-	1																																																																				1
ACCG/CGGT	-		1																																																																			1
ACGC/CGTG	-				1																																																																	1
ACGT/ACGT	-	4	4																																																																			8
ACTC/AGTG	-	2	2	1																																																																		5
AGAT/ATCT	-	1																																																																				1
AGCC/CTGG	-	6	2																																																																			8
AGCG/CGCT	-		1																																																																			1
AGGC/CCTG	-	1																																																																				1
AGGG/CCCT	-	1																																																																				1
ATCC/ATGG	-	7	1																																																																			8
ATCG/ATCG	-	2																																																																				2
ATGC/ATGC	-	1																																																																				1
CCCG/CGGG	-	1																																																																				1
AAAAC/GTTTT	5	1	1																																																																			7
AAAAG/CTTTT	25	1				1																																																																27
AAAAT/ATTTT	2																																																																					2
AAACG/CGTTT	2																																																																					2
AAAGG/CCTTT	4																																																																					4
AAATC/ATTTG	4																																																																					4
AAATG/ATTTC	1																																																																					1
AAATT/AATTT	1																																																																					1
AACAC/GTGTT		1																																																																				1
AACAG/CTGTT	1		1					1																																																														3
AACCC/GGGTT	2																																																																					2
AACGC/CGTTG	1																																																																					1
AAGAC/CTTGT			1																																																																			1
AAGAG/CTCTT	11			1																																																																		12
AAGAT/ATCTT	6	1																																																																				7
AAGCC/CTTGG	1	1																																																																				2
AAGCG/CGCTT	1																																																																					1
AAGCT/AGCTT	1																																																																					1
AAGGG/CCCTT	4		1																																																																			5
AAGTC/ACTTG	1																																																																					1
AATAG/ATTCT	1																																																																					1
AATAT/ATATT	1																																																																					1
AATGG/ATTCC	1																																																																					1
AATGT/ACATT	1																																																																					1
ACACC/GGTGT	2	1																																																																				3
ACACG/CGTGT	1																																																																					1
ACAGC/CTGTG	1																																																																					1
ACATC/ATGTG	2																																																																					2
ACATG/ATGTC	1																																																																					1
ACCAG/CTGGT	2																																																																					2
ACCAT/ATGGT	1																																																																					1
ACCCC/GGGGT	1																																																																					1
ACCCG/CGGGT	2																																																																					2
ACCGC/CGGTG	2																																																																					2
ACCGT/ACGGT	2																																																																					2
ACGAG/CGTCT	4	1																																																																				5
ACGCC/CGTGG		2																																																																				2
ACGCG/CGCGT	7																																																																					7
ACGCT/AGCGT	2																																																																					2
ACTAT/AGTAT	2																																																																					2
ACTCC/AGTGG	1																																																																					1
ACTCG/AGTCG	1																																																																					1
ACTCT/AGAGT	1																																																																					1
ACTGG/AGTCC	2																																																																					2
AGAGG/CCTCT	5																																																																					5
AGATC/ATCTG	2																																																																					2
AGATG/ATCTC	1																																																																					1
AGCAT/ATGCT	2																																																																					2
AGCCC/CTGGG	4																																																																					4
AGCGC/CGCTG	1																																																																					1
AGCGG/CCGCT	1																																																																					1
AGGCC/CCTGG	1																																																																					1
AGGCG/CCTCG	1																																																																					1
AGGGG/CCCCT	6	1																																																																				7
ATATC/ATATG	1																																																																					1
ATCCC/ATGGG	1					1																																																																2
ATCCG/ATCGG	1																																																																					1
ATGCC/ATGGC	2																																																																					2
CCCCG/CGGGG	11	1	1																																																																			13
CCCGG/CCGGG	1																																																																					1
CCGCG/CGCGG	3																																																																					3
AAAAAC/GTTTTT	6	1								1																																																												8
AAAAAG/CTTTTT	3																																																																					3
AAAAAT/ATTTTT	2																																																																					2
AAAACC/GGTTTT	1																																																																					1
AAAAGG/CCTTTT	2																																																																					2
AAAATC/ATTTTG		1																																																																				1
AAAATG/ATTTTC		1																																																																				1
AAACAC/GTGTTT	1																																																																					1
AAACCC/GGGTTT	4		2																																																																			6
AAACGC/CGTTTG	1																																																																					1
AAAGAC/CTTTGT		1																																																																				1
AAAGAG/CTCTTT	10	1		1																																																																		12
AAAGCC/CTTTGG	2																																																																					2
AAAGGC/CCTTTG	1																																																																					1
AAAGTC/ACTTTG	1																																																																					1
AAAGTG/ACTTTC	1																																																																					1
AAATCC/ATTTGG			1																																																																			1
AACACC/GGTGTT	3																																																																					3
AACAGC/CTGTTG	10		1			1																																																																12
AACATC/ATGTTG	1																																																																					1
AACATG/ATGTTC	1																																																																					1
AACCAG/CTGGTT	1																																																																					1
AACCCC/GGGGTT	3																																																																					3
AACCCG/CGGGTT	2	1																																																																				3
AACCGC/CGGTTG	1																																																																					1
AACCTC/AGGTTG	1																																																																					1
AACGAC/CGTTGT	1																																																																					1
AACGAG/CGTTCT	1																																																																					1
AACGGC/CCGTTG	2																																																																					2
AACGGG/CCCGTT	1																																																																					1
AACGTG/ACGTTC	2																																																																					2
AACTCC/AGTTGG	1																																																																					1
AACTGC/AGTTGC	1																																																																					1
AAGACG/CGTCTT	5			1																																																																		6
AAGAGG/CCTCTT	14	2														1																																																						17
AAGATG/ATCTTC	2	1																																																																				3
AAGCAC/CTTGTG	1	1																																																																				2
AAGCCC/CTTGGG	4																																																																					4
AAGCCG/CGGCTT	2																																																																					2
AAGGAC/CCTTGT	2		1																																																																			3
AAGGAG/CCTTCT	4	1	1																																																																			6
AAGGAT/ATCCTT	1																																																																					1
AAGGGC/CCCTTG	7																																																																					7
AAGGGG/CCCCTT	5																																																																					5
AAGGTC/ACCTTG	1																																																																					1
AAGGTG/ACCTTC		1																																																																				1
AAGTAC/ACTTGT	1																																																																					1
AAGTGC/ACTTGC				1																																																																		1
AAGTGG/ACTTCC	2																																																																					2
AATCAG/ATTCTG	1																																																																					1
AATCAT/ATGATT	1																																																																					1
AATCCC/ATTGGG		1																																																																				1
AATCCG/ATTCGG	1																																																																					1
AATGAG/ATTCTC	1																																																																					1
AATGGG/ATTCCC	3		1	1																																																																		5
ACACAG/CTGTGT	2																																																																					2
ACACCC/GGGTGT	1	1																																																																				2
ACACGG/CCGTGT	1																																																																					1
ACAGAG/CTCTGT	3											1																																																										4
ACAGCC/CTGTGG		1																																																																				1
ACAGTC/ACTGTG	1																																																																					1
ACATCT/AGATGT	1																																																																					1
ACCAGC/CTGGTG	2	2	1	2									1																																																									8
ACCATC/ATGGTG	2	1	1																																																																			4
ACCCAG/CTGGGT	1	1																																																																				2
ACCCAT/ATGGGT	2																																																																					2
ACCCCC/GGGGGT	3	3																																																																				6
ACCCCG/CGGGGT	4			1																																																																		5
ACCCGC/CGGGTG	3	2																																																																				5
ACCCGG/CCGGGT	1																																																																					1
ACCCGT/ACGGGT	1																																																																					1
ACCCTC/AGGGTG	1																																																																					1
ACCCTG/AGGGTC	1																																																																					1
ACCGCC/CGGTGG	6																																																																					6
ACCGGC/CCGGTG	4																																																																					4
ACCGGG/CCCGGT	1																																																																					1
ACCGGT/ACCGGT	1																																																																					1
ACCGTC/ACGGTG		1																																																																				1
ACCTCC/AGGTGG	6	1																																																																				7
ACCTGC/AGGTGC	4																																																																					4
ACGACT/AGTCGT	1																																																																					1
ACGAGC/CGTGCT	3																																																																					3
ACGAGG/CCTCGT	3		1																																																																			4
ACGAGT/ACTCGT	15	2		1																																																																		18
ACGATG/ATCGTC	3	1																																																																				4
ACGCAG/CGTCTG		1																																																																				1
ACGCCC/CGTGGG	3	1																																																																				4
ACGCCG/CGGCGT	9	5	1		1																																																																	16
ACGCGC/CGCGTG	1																																																																					1
ACGCGG/CCGCGT	1																																																																					1
ACGGCC/CCGTGG	2																																																																					2
ACGGCG/CCGTCG		1																																																																				1
ACGGGC/CCCGTG	1																																																																					1
ACGGGG/CCCCGT	3	2	1																																																																			6
ACGTAG/ACGTCT	1																																																																					1
ACGTCG/ACGTCG	1																																																																					1
ACTCAG/AGTCTG	2																																																																					2
ACTCCC/AGTGGG	2																																																																					2
ACTCCG/AGTCGG	1		1																																																																			2
ACTCGG/AGTCCG	2																																																																					2
ACTCTC/AGAGTG	6	2																																																																				8
ACTCTG/AGAGTC	2							1																																																														3
ACTGAG/AGTCTC	1																																																																					1
ACTGGC/AGTGCC	2																																																																					2
ACTGGG/AGTCCC	1			1																																																																		2
AGAGCC/CTCTGG		1	1																																																																			2
AGAGGC/CCTCTG	2									1																																																												3
AGAGGG/CCCTCT	2	1																																																																				3
AGATAT/ATATCT	1																																																																					1
AGATGC/ATCTGC	1																																																																					1
AGATGG/ATCTCC	1																																																																					1
AGCATC/ATGCTG		1																																																																				1
AGCCCC/CTGGGG	6																																																																					6
AGCCCG/CGGGCT	1																																																																					1
AGCCGC/CGGCTG	1																																																																					1
AGCCGG/CCGGCT		1																																																																				1
AGCCTG/AGGCTC	1	1		1						1																																																												4
AGCGCC/CGCTGG	5	1																																																																				6
AGCGCG/CGCGCT	1																																																																					1
AGCGCT/AGCGCT	1																																																																					1
AGCGGG/CCCGCT	2																																																																					2
AGGATG/ATCCTC	7	3									1																																																											11
AGGCCC/CCTGGG	2																																																																					2
AGGCGC/CCTGCG	1																																																																					1
AGGCGG/CCGCCT	1																																																																					1
AGGGCG/CCCTCG	3																																																																					3
AGGGGC/CCCCTG	4	1																																																																				5
AGGGGG/CCCCCT	14	4																																																																				18
ATCCCC/ATGGGG	2	1		1																																																																		4
ATCGCC/ATGGCG	3																																																																					3
ATCGGC/ATGCCG	1																																																																					1
ATGCCC/ATGGGC	1	1																																																																				2
ATGCGC/ATGCGC		1																																																																				1
CCCCCG/CGGGGG	9	2	1																																																																			12
CCCCGG/CCGGGG	5	2																																																																				7
CCCGCG/CGCGGG	9	1																																																																				10
CCGGCG/CCGGCG	1																																																																					1
