Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-17/megassr/results/hub_GCA_056622355.1/fasta/hub_GCA_056622355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              14
Total size of examined sequences (bp):           18986351
Total number of identified SSRs:                 1647
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    129


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	134
2	300
3	393
4	124
5	169
6	527

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	8	6	4	2	2	1	1	2	3	4	1	3	2	1		1	2	1	1		2	1			1						1																								54
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		3	1	2	2	1							1			1																																								11
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	4	4	3	1	1			1									1																																						17
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	10	6	6	3	5	2	1	1	2	4	1	3		3	1	1	1		1	1																																				52
AC	-	-	-	2	1	5																																																																			8
AG	-	-	-	12	4	3		1								1																																																									21
AT	-	-	-	40	22	13	11	4	5	2	1	1	1	1		1																																																									102
CA	-	-	-	4	1	2	2	1																																																																	10
CT	-	-	-	24	3	3						1	1																																																												32
GA	-	-	-	8	6	2																																																																			16
GC	-	-	-	2																																																																					2
GT	-	-	-	4		1				1																																																															6
TA	-	-	-	26	7	10	15	5	6			2			2					1																																																					74
TC	-	-	-	15	1	1		1																																																																	18
TG	-	-	-	7		3	1																																																																		11
AAC	-	-	1		1																																																																				2
AAG	-	-	12	2	2																																																																				16
AAT	-	-	3	2																																																																					5
ACA	-	-	3	1		2		1																																																																	7
ACC	-	-	3	4																																																																					7
ACT	-	-	1																																																																						1
AGA	-	-	11	3	2		1																																																																		17
AGC	-	-	7	3	1																																																																				11
AGG	-	-	6	1	1																																																																				8
ATA	-	-	3					1																																																																	4
ATC	-	-	2	1	1				1																																																																5
ATG	-	-	5	2		1																																																																			8
ATT	-	-	1																																																																						1
CAA	-	-	6	1	1				1																																																																9
CAC	-	-	2	1																																																																					3
CAG	-	-	5	4	1	2																																																																			12
CAT	-	-	5	2	2																																																																				9
CCA	-	-	6	2		3																																																																			11
CCG	-	-	5	1																																																																					6
CCT	-	-	7		1																																																																				8
CGA	-	-	2	1																																																																					3
CGC	-	-	1	1																																																																					2
CGG	-	-	2	3																																																																					5
CGT	-	-	1	1																																																																					2
CTA	-	-	1																																																																						1
CTC	-	-	1	1																																																																					2
CTG	-	-	7	2				1																																																																	10
CTT	-	-	9	2	3																																																																				14
GAA	-	-	10	3		1					1																																																														15
GAC	-	-	3			1																																																																			4
GAG	-	-	5	2				1																																																																	8
GAT	-	-	1	5		2	1																																																																		9
GCA	-	-	5	2	2																																																																				9
GCC	-	-	1		1																																																																				2
GCG	-	-	2				1																																																																		3
GCT	-	-	6	3	2		1		1																																																																13
GGA	-	-	9																																																																						9
GGC	-	-	1		1																																																																				2
GGT	-	-	2	3	4	2																																																																			11
GTA	-	-	1																																																																						1
GTC	-	-	1		1																																																																				2
GTG	-	-	6		3																																																																				9
GTT	-	-	1	2	1																																																																				4
TAA	-	-	2	1	1																																																																				4
TAC	-	-	2																																																																						2
TAG	-	-	1																																																																					1	2
TCA	-	-	9	1																																																																					10
TCC	-	-	7	1	1	1				1																																																															11
TCG	-	-	5	2		2																																																																			9
TCT	-	-	10	1	2																																																																				13
TGA	-	-	5	1																																																																					6
TGC	-	-	4	1	2	1			1																																																																9
TGG	-	-	2	2	1			1		1																																																															7
TGT	-	-	4	4	1																																																																				9
TTA	-	-	1	2	1																																																																				4
TTC	-	-	8	1		1																																																																			10
TTG	-	-	2	1	1		2					1																																																													7
AAAC	-	2																																																																							2
AAAG	-	1																																																																							1
AAAT	-		1																																																																						1
AACG	-	1																																																																							1
AAGA	-	1																																																																							1
AATA	-	4		1																																																														1							6
ACGC	-	1																																																																							1
ACGT	-	1																																																																							1
ACTG	-		1																																																																						1
AGGA	-	6	2																																																																						8
AGGG	-	1																																																																							1
ATAA	-	2			1																																																																				3
ATAC	-	1																																																																							1
ATGA	-	2																																																																							2
ATGG	-	2			1																																																																				3
ATTT	-	3		1																																																																					4
CAAA	-	2																																																																							2
CATC	-	3	1	1																																																																					5
CATT	-	1																																																																							1
CCAT	-			1			1			1																																																															3
CGAG	-	1																																																																							1
CGGA	-	1																																																																							1
CGTC	-	1																																																																							1
CTAA	-			1																																																																					1
CTGC	-	1																																																																							1
CTTC	-	2																																																																							2
CTTT	-	8	4	1																																																																					13
GAAA	-	4	2																																																																						6
GAAG	-	3	2																																																																						5
GAAT	-		1																																																																						1
GACG	-	1																																																																							1
GATG	-	4																																																																							4
GCAT	-	1																																																																							1
GCCG	-	1																																																																							1
GGAC	-	1																																																																							1
GGAT	-	1		1																																																																					2
GGGA	-	1																																																																							1
GGTA	-	1																																																																							1
TAAA	-						1																																																																		1
TATT	-		1																																																																						1
TCAA	-	1																																																																							1
TCAT	-	1																																																																							1
TCCA	-	1																																																																							1
TCCG	-		1																																																																						1
TCCT	-	2																																																																							2
TCTA	-	1																																																																							1
TCTT	-	2		1																																																																					3
TGAC	-	1																																																																							1
TGCT	-	1																																																																							1
TGGA	-	2	1																																																																						3
TGGG	-	1																																																																							1
TTAT	-	2			1																																														1																						4
TTCC	-	2																																																																							2
TTCT	-	1																																																																							1
TTGC	-	1																																																																							1
TTTA	-	4	1																																																																						5
TTTC	-	1																																																																							1
AAAAG	2	1																																																																							3
AAAAT	4																																																																								4
AAAGA	2			1																																																																					3
AAAGG	2																																																																								2
AAATA	1																																																																								1
AAATT	1																																																																								1
AACCA	1																																																																								1
AAGAA	1																																																																								1
AAGAG	1																																																																								1
AAGGG	1																																																																								1
AAGTG	1	1																																																																							2
AATAA	3																																																																								3
AATAC	1																																																																								1
AATCA	2																																																																								2
AATCC	2		1																																																																						3
AATCG	2																																																																								2
AATCT	1																																																																								1
AATGA	1																																																																								1
AATGT	1																																																																								1
AATTA	1																																																																								1
AATTT	1																																																																								1
ACATT	1																																																																								1
ACCCT	1																																																																								1
ACGCG	2																																																																								2
ACGCT			1																																																																						1
AGAAC	1																																																																								1
AGAAG	2																																																																								2
AGAGA	1																																																																								1
AGATG	1																																																																								1
AGATT	2																																																																								2
AGCCA	1																																																																								1
AGGGA	1																																																																								1
AGGGG	2																																																																								2
ATATT	1																																																																								1
ATCTC	1																																																																								1
ATGGA	1																																																																								1
ATGTA	1	1																																																																							2
ATTAT	1																																																																								1
ATTGA	1																																																																								1
ATTGC	1																																																																								1
ATTTT	2																																																																								2
CACAA	1																																																																								1
CACCC	1																																																																								1
CATCT	1																																																																								1
CATGT	1																																																																								1
CATTA	2																																																																								2
CCAAC	1																																																																								1
CCACT	1																																																																								1
CCATC	1																									1																																															2
CCATT	1																																																																								1
CCCAA	1																																																																								1
CCCCA	1																																																																								1
CCGCA	1																																																																								1
CCTCC		1																																																																							1
CGACT	1																																																																								1
CGATG	1																																																																								1
CGATT	1																																																																								1
CGCCC		1																																																																							1
CGCGT	1																																																																								1
CGTTC	1																																																																								1
CTAAC	1																																																																								1
CTAAT	2																																																																								2
CTATG	1																																																																								1
CTCTT	2																																																																								2
CTGCC	1																																																																								1
CTGGA	1																																																																								1
CTTCT	1																																																																								1
CTTTC					1																																																																				1
GAAAT	1																																																																								1
GAAGG	1																																																																								1
GACAA	1																																																																								1
GACGC	4																																																																								4
GAGAA	1																																																																								1
GAGAT	2	1																																																																							3
GATAG		1																																																																							1
GATTT	1																																																																								1
GCATA	1																																																																								1
GCATC	1																																																																								1
GCCAC	1																																																																								1
GCTTT	1																																																																								1
GGAAA	2																																																																								2
GGAGA	1																																																																								1
GGATC	1																																																																								1
GGGAA	1																																																																								1
GGGGA	2																																																																								2
GGGTG	1																																																																								1
GGGTT	1																																																																								1
GGTAC		1																																																																							1
GGTAT	1																																																																								1
GTATC	2																																																																								2
GTGAT	1																																																																								1
GTGGG	1																																																																								1
GTTTT	1																																																																								1
TAAAT				1																																																																					1
TACAT	1																																																																								1
TACCC		1																																																																							1
TAGGA	1																																																																								1
TATTT	1																																																																								1
TCAGA		1																																																																							1
TCCGA	1																																																																								1
TCCTT	1																																																																								1
TCGAG	1																																																																								1
TCGTG			1																																																																						1
TCTAA	4																																																																								4
TCTGC		1																																																																							1
TCTTC	1																																																																								1
TCTTT		1																																																																							1
TGAGA	1	1																																																																							2
TGATC		1																																																																							1
TGGGG	1																																																																								1
TGTAA	1																																																																								1
TGTCA	1																																																																								1
TTAGA	1																																																																								1
TTATA	2																																																																								2
TTCCA	1																																																																								1
TTCCT	1																																																																								1
TTCGT	1																																																																								1
TTGTA	1																																																																								1
TTTCA	1																																																																								1
TTTCG	1	1																																																																							2
TTTGT	1																																																																								1
TTTTA		1																																																																							1
TTTTC	5																																																																								5
TTTTG	3																																																																								3
AAAAAC	2																																																																								2
AAAAAG	1																																																																								1
AAAAAT		1																																																																							1
AAAACA	1																																																																								1
AAAACC	13																																																																								13
AAAAGA		1																																																																							1
AAAATA	1																																																																								1
AAAGAA	1																																																																								1
AAAGGT	1																																																																								1
AAATAA	38	2																																																																							40
AAATAT	1																																																																								1
AACAAA	1																																																																								1
AAGAAA		1																																																																							1
AAGCCC	1																																																																								1
AAGGAA		1																																																																							1
AAGGAG	1	1																																																																							2
AAGGGA			1																																																																						1
AAGGGC	1																																																																								1
AAGGGG	1																																																																								1
ACAATG		1																																																																							1
ACAATT	1																																																																								1
ACACCC	1																																																																								1
ACATGA	1																																																																								1
ACCCAG	1																																																																								1
ACCGGG	1																																																																								1
ACCTGC	1																																																																								1
ACTCAA	1																																																																								1
AGAAGC	1																																																																								1
AGAAGG	2																																																																								2
AGAGAA			1																																																																						1
AGAGAC	1																																																																								1
AGAGGG	1																																																																								1
AGAGTT	1																																																																								1
AGCAGA					1																																																																				1
AGCAGG	1																																																																								1
AGCCAA	2																																																																								2
AGCGGT	1																																																																								1
AGCTTG		1																																																																							1
AGGAGA	1																																																																								1
AGGGGG	1																																																																								1
AGTGGT	1																																																																								1
ATAATG	1																																																																								1
ATACCA	1																																																																								1
ATATAC																																																			1																						1
ATCACC	1																																																																								1
ATCCCA	1																																																																								1
ATCCTC		1																																																																							1
ATGGAT	1																																																																								1
ATGGCA	1																																																																								1
ATGGGA		1			1																																																																				2
ATGGGT	1																																																																								1
ATGTAG	1																																																																								1
ATTCCC	1																																																																								1
CAAAAA	2																																																																								2
CAAACC	1																																																																								1
CAACAG	2	1																																																																							3
CAAGCA	2																																																																								2
CAAGCT	1	1																																																																							2
CAAGGC	1																																																																								1
CAATCG	1																																																																								1
CAATCT	1																																																																								1
CACCAG	1																																																																								1
CACCAT	1																																																																								1
CACCCC	1																																																																								1
CACCGG	1																																																																								1
CACCGT	1																																																																								1
CACCTC	2	1																																																																							3
CACTAT	1																																																																								1
CAGAAA			1																																																																						1
CAGAAC		1																																																																							1
CAGAAG	1																																																																								1
CAGACA	1																																																																								1
CAGCAA	1	1																																																																							2
CAGCTC	1																																																																								1
CAGCTT	1																																																																								1
CAGGCT	2																																																																								2
CAGTCT	1																																																																								1
CATATA	1																																																																								1
CATCGG	1																																																																								1
CATCTA		1																																																																							1
CATGAT	1																																																																								1
CATGGG		1																																																																							1
CATGGT	1																																																																								1
CCAAAC	1																																																																								1
CCAACA	1		1																																																																						2
CCAACC	1																																																																								1
CCAAGT	1																																																																								1
CCACAG	1																																																																								1
CCACAT	2																																																																								2
CCACCC	1																																																																								1
CCAGCA		1																																																																							1
CCATCC		1																																																																							1
CCATGC		1																																																																							1
CCATTC	1																																																																								1
CCATTT	2																																																																								2
CCCAAA	1																																																																								1
CCCAAG	1																																																																								1
CCCAGA		1																																																																							1
CCCAGC		2																																																																							2
CCCATA	1																																																																								1
CCCATC	2																																																																								2
CCCCAC		1																																																																							1
CCCCAT			1																																																																						1
CCCCCA	1																																																																								1
CCCCCG	1																																																																								1
CCCCCT	3																																																																								3
CCCCGA	1																																																																								1
CCCGAC	1																																																																								1
CCCTGC	1																																																																								1
CCGCAC		1																																																																							1
CCGCCA	1																																																																								1
CCGGCA	1																																																																								1
CCGTCT		1																																																																							1
CCGTTA	1																																																																								1
CCTCAA	1																																																																								1
CCTCAC	1																																																																								1
CCTCAG	1																																																																								1
CCTCAT	2																																																																								2
CCTCCA	2	1																																																																							3
CCTCCC	2																																																																								2
CCTCGT	1																																																																								1
CCTCTC	1																																																																								1
CCTGCA		1																																																																							1
CCTGCC	1																																																																								1
CCTGCT		1																																																																							1
CCTGTT	1																																																																								1
CCTTTC	1																																																																								1
CCTTTT	1																																																																								1
CGAACC	1																																																																								1
CGACAC	1																																																																								1
CGACGT	1																																																																								1
CGAGGA	2																																																																								2
CGAGTC	1																																																																								1
CGCCGG	1																																																																								1
CGCCGT	1																																																																								1
CGCTGC	1																																																																								1
CGGTCC	1																																																																								1
CGTCTG	1																																																																								1
CGTGCT	1																																																																								1
CGTTTG	1																																																																								1
CTAAGT		1																																																																							1
CTACCA	1																																																																								1
CTACTC	1																																																																								1
CTATGG	1																																																																								1
CTCAAG	1																																																																								1
CTCATC	2																1																																																								3
CTCCAC			1																																																																						1
CTCCCC	4	4																																																																							8
CTCCCG	2																																																																								2
CTCGCC	1																																																																								1
CTCTCC	1																																																																								1
CTCTGG	1																																																																								1
CTCTTC		1																																																																							1
CTGACT	1																																																																								1
CTGCCC	1																																																																								1
CTGGAG	1	1																																																																							2
CTGGAT	1																																																																								1
CTGGGG	1																																																																								1
CTGTCC	1																																																																								1
CTGTTG	1																																																																								1
CTTCCC	1																																																																								1
CTTGCT	1																																																																								1
CTTGGT	1																																																																								1
CTTTCT		1																																																																							1
CTTTGC	1																																																																								1
CTTTTC	1																																																																								1
CTTTTT	1																																																																								1
GAAAAA	1																																																																								1
GAAACG	1																																																																								1
GAACCT		1																																																																							1
GAAGAG	1																																																																								1
GAAGAT				1																																																																					1
GAAGCT	1																																																																								1
GAAGGA	1																																																																								1
GACGAA	1																																																																								1
GACGAG	1																																																																								1
GACGAT	2																																																																								2
GACTCC	1																																																																								1
GACTCG	1																																																																								1
GAGAAC	1																																																																								1
GAGACC	1																																																																								1
GAGAGG	1																																																																								1
GAGATG	2																																																																								2
GAGCAG	1																																																																								1
GAGCGC	1																																																																								1
GAGGAA	2	2																																																																							4
GAGGAC	1																																																																								1
GAGGAT		1																																																																							1
GAGGGT		1																																																																							1
GAGGTG	1																																																																								1
GATAAA	1																																																																								1
GATCCG	1																																																																								1
GATCCT	1																																																																								1
GATCTC	1																																																																								1
GATGAA	1																																																																								1
GATGAG	2																																																																								2
GATGGA	1																																																																								1
GATGTC	1																																																																								1
GATTCT		1																																																																							1
GATTTT	1																																																																								1
GCAACA	2																																																																								2
GCAAGA	1																																																																								1
GCACAA	1																																																																								1
GCACCA	1																																																																								1
GCAGGC	1																																																																								1
GCATGG	1																																																																								1
GCCACA	1																																																																								1
GCCAGC	1																																																																								1
GCCCCC	1																																																																								1
GCCGGG	1																																																																								1
GCGCAT	1																																																																								1
GCGTCT	1																																																																								1
GCGTTT	1																																																																								1
GCTCAA	1																																																																								1
GCTCAG	1																																																																								1
GCTGAA	1																																																																								1
GCTGAG	1																																																																								1
GCTGAT	1																																																																								1
GCTGGT		1																																																																							1
GCTTGA	1																																																																								1
GGAAAA	1																																																																								1
GGAAGG		1																																																																							1
GGACAA	1																																																																								1
GGACCA			1																																																																						1
GGACGA		1																																																																							1
GGACGG	1																																																																								1
GGAGAA		1																																																																							1
GGAGAG		1																																																																							1
GGAGCG	1																																																																								1
GGAGCT	1																																																																								1
GGAGGG			1																																																																						1
GGAGGT		1																																																																							1
GGATGG	1																																																																								1
GGCCCG	1																																																																								1
GGCGAT	1																																																																								1
GGCGCA	1																																																																								1
GGCGCC	1																																																																								1
GGCGGA	2																																																																								2
GGCGGG	2																																																																								2
GGCGGT	1																																																																								1
GGCTCA	1	1																																																																							2
GGCTGT	1																																																																								1
GGGAAA	1																																																																								1
GGGAAG	1																																																																								1
GGGAGG	2																																																																								2
GGGATG	2																																																																								2
GGGCAA	1																																																																								1
GGGCAC	1																																																																								1
GGGGAA	1																																																																								1
GGGGAG	1	2																																																																							3
GGGGGA	9	2																																																																							11
GGGGGT	1																																																																								1
GGGTAT	1																																																																								1
GGGTGC		1																																																																							1
GGGTTT	1																																																																								1
GGTACC	1																																																																								1
GGTACG		1																																																																							1
GGTCGC		1																																																																							1
GGTGCA	1																																																																								1
GGTGGA	1																																																																								1
GGTGGC	2																																																																								2
GGTGTG	1																																																																								1
GGTTCA					1																																																																				1
GGTTCT	1																																																																								1
GGTTTC	1																																																																								1
GTATGG	1																																																																								1
GTCCCG	1																																																																								1
GTCCGA		1																																																																							1
GTCTCT	2																																																																								2
GTCTGC			1																																																																						1
GTCTTT		1																																																																							1
GTGCTG	1																																																																								1
GTGGCG	1																																																																								1
GTGGGT	1																																																																								1
GTGTGG	1																																																																								1
GTTCGG			1																																																																						1
GTTGCC	1																																																																								1
TAACAC		1																																																																							1
TACATT	1																																																																								1
TACCCA		1																																																																							1
TACCGG	1																																																																								1
TACTGC	1																																																																								1
TACTTG	1																																																																								1
TAGCAT		1																																																																							1
TAGGAT	1																																																																								1
TATTTT	35	3																																																																							38
TCAACA	1																																																																								1
TCAGAG	1																																																																								1
TCAGAT	1																																																																								1
TCATCC	2																																																																								2
TCATCT					1																																																																				1
TCATTG		1																																																																							1
TCATTT	1																																																																								1
TCCAAT	1																																																																								1
TCCATT	1																																																																								1
TCCCAA	1																																																																								1
TCCCGC	1																																																																								1
TCCCTC	1																																																																								1
TCCTCA		2																																																																							2
TCCTCT	2																																																																								2
TCCTTC	1																																																																								1
TCCTTG		1																																																																							1
TCGCAT	1																																																																								1
TCGCTG	1																																																																								1
TCTAAA	1																																																																								1
TCTCAG	1																																																																								1
TCTCCC	2																																																																								2
TCTCCT	1																																																																								1
TCTCTG	1																																																																								1
TCTCTT	1																																																																								1
TCTGCT	1																																																																								1
TCTGGT	1																																																																								1
TCTTCA	1																																																																								1
TCTTCC	1																																																																								1
TCTTCG	1																																																																								1
TCTTGC		1																																																																							1
TCTTTT	1																																																																								1
TGACCT	1																																																																								1
TGAGCC	1																																																																								1
TGATTT	1																																																																								1
TGCAAC		1																																																																							1
TGCCCC		1																																																																							1
TGCCCG	1																																																																								1
TGCCCT			1																																																																						1
TGCGAG	1																																																																								1
TGCGCG	1																																																																								1
TGCGTC	1																																																																								1
TGCTCG	1																																																																								1
TGCTGA	1																																																																								1
TGCTGT	1																																																																								1
TGGAAG			1																																																																						1
TGGCTC	1																																																																								1
TGGGAA	1																																																																								1
TGGGAT	1																																																																								1
TGGGGG	1																																																																								1
TGGGGT	1																																																																								1
TGGTGC	1																																																																								1
TGGTGT	1	1																																																																							2
TGTCAT		1																																																																							1
TGTCCT	1																																																																								1
TGTTAT																																					1																																				1
TGTTGC	1		1																																																																						2
TGTTTT	2																																																																								2
TTACAA	1																																																																								1
TTATAT	1																																																																								1
TTCACA	1																																																																								1
TTCAGA	1																																																																								1
TTCATC	1																																																																								1
TTCCCT	1																																																																								1
TTCCTT	3																																																																								3
TTCTCC	2																																																																								2
TTGAGC	1																																																																								1
TTGCTG	1																																																																								1
TTGGCG	1																																																																								1
TTTCCA	1																																																																								1
TTTCCC	1																																																																								1
TTTCCT		1																																																																							1
TTTCTC	1																																																																								1
TTTGCC		1																																																																							1
TTTGCT	1																																																																								1
TTTGGG	1																																																																								1
TTTTCT	1	1																																																																							2
TTTTTA	1																																																																								1
TTTTTC	1																																																																								1
TTTTTG	1																																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	14	14	12	7	7	4	2	2	4	7	5	4	3	5	2	1	2	2	2	2		2	1			1						1																								106
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	7	5	5	3	2			1				1			1		1																																						28
AC/GT	-	-	-	17	2	11	3	1		1																																																															35
AG/CT	-	-	-	59	14	9		2				1	1			1																																																									87
AT/AT	-	-	-	66	29	23	26	9	11	2	1	3	1	1	2	1				1																																																					176
CG/CG	-	-	-	2																																																																					2
AAC/GTT	-	-	17	9	5	2	2	1	1			1																																																													38
AAG/CTT	-	-	60	12	9	2	1				1																																																														85
AAT/ATT	-	-	10	5	2			1																																																																	18
ACC/GGT	-	-	21	12	8	5		1		1																																																															48
ACG/CGT	-	-	12	4	1	3																																																																			20
ACT/AGT	-	-	6																																																																					1	7
AGC/CTG	-	-	34	15	8	3	1	1	2																																																																64
AGG/CCT	-	-	35	5	3	1		1		1																																																															46
ATC/ATG	-	-	27	12	3	3	1		1																																																																47
CCG/CGG	-	-	12	5	2		1																																																																		20
AAAC/GTTT	-	4																																																																							4
AAAG/CTTT	-	18	6	2																																																																					26
AAAT/ATTT	-	15	3	2	2		1																																												1															1							25
AACG/CGTT	-	1																																																																							1
AACT/AGTT	-			1																																																																					1
AAGC/CTTG	-	2																																																																							2
AAGG/CCTT	-	15	4																																																																						19
AATC/ATTG	-	1																																																																							1
AATG/ATTC	-	4	1																																																																						5
ACAT/ATGT	-	1																																																																							1
ACCC/GGGT	-	1																																																																							1
ACCT/AGGT	-	1																																																																							1
ACGC/CGTG	-	1																																																																							1
ACGG/CCGT	-	4	1																																																																						5
ACGT/ACGT	-	1																																																																							1
ACTG/AGTC	-	1	1																																																																						2
AGAT/ATCT	-	1																																																																							1
AGCG/CGCT	-	1																																																																							1
AGGC/CCTG	-	1																																																																							1
AGGG/CCCT	-	2																																																																							2
ATCC/ATGG	-	13	2	3	1		1			1																																																															21
ATGC/ATGC	-	1																																																																							1
CCGG/CCGG	-	1																																																																							1
AAAAC/GTTTT	5																																																																								5
AAAAG/CTTTT	10	2		1																																																																					13
AAAAT/ATTTT	11	1																																																																							12
AAACC/GGTTT	1																																																																								1
AAACG/CGTTT	2	1																																																																							3
AAAGC/CTTTG	1																																																																								1
AAAGG/CCTTT	6				1																																																																				7
AAATC/ATTTG	3																																																																								3
AAATG/ATTTC	3																																																																								3
AAATT/AATTT	3			1																																																																					4
AACAC/GTGTT	1																																																																								1
AACAG/CTGTT	1																																																																								1
AACCC/GGGTT	3																																																																								3
AACCT/AGGTT	1																																																																								1
AACGG/CCGTT	1																																																																								1
AAGAC/CTTGT	1																																																																								1
AAGAG/CTCTT	9																																																																								9
AAGCC/CTTGG	1																																																																								1
AAGGG/CCCTT	4																																																																								4
AAGTG/ACTTC	1	1																																																																							2
AATAC/ATTGT	2																																																																								2
AATAT/ATATT	4																																																																								4
AATCC/ATTGG	2		1																																																																						3
AATCG/ATTCG	3																																																																								3
AATCT/AGATT	10																																																																								10
AATGC/ATTGC	1																																																																								1
AATGG/ATTCC	3																																																																								3
AATGT/ACATT	7	1																																																																							8
AATTC/AATTG	1																																																																								1
ACACG/CGTGT			1																																																																						1
ACATC/ATGTG	1																																																																								1
ACATG/ATGTC	2																																																																								2
ACCAT/ATGGT	1																																																																								1
ACCCC/GGGGT	5																																																																								5
ACCCT/AGGGT	1	1																																																																							2
ACCGC/CGGTG	1																																																																								1
ACCGT/ACGGT		1																																																																							1
ACGAT/ATCGT	2																																																																								2
ACGCC/CGTGG	1																																																																								1
ACGCG/CGCGT	7																																																																								7
ACGCT/AGCGT			1																																																																						1
ACTCC/AGTGG	1																																																																								1
ACTCG/AGTCG	2																																																																								2
ACTGG/AGTCC	1																																																																								1
AGAGC/CTCTG		1																																																																							1
AGAGG/CCTCT	1																																																																								1
AGATC/ATCTG		2																																																																							2
AGATG/ATCTC	6	2																																																																							8
AGCAT/ATGCT	2																																																																								2
AGGAT/ATCCT	1	1																																																																							2
AGGGC/CCCTG	1																																																																								1
AGGGG/CCCCT	4	1																																																																							5
ATCCC/ATGGG	1																									1																																															2
ATCCG/ATCGG	2																																																																								2
ATCGC/ATGCG	2																																																																								2
CCCCG/CGGGG		1																																																																							1
AAAAAC/GTTTTT	9																																																																								9
AAAAAG/CTTTTT	7	3																																																																							10
AAAAAT/ATTTTT	75	6																																																																							81
AAAACC/GGTTTT	13																																																																								13
AAAAGC/CTTTTG	1																																																																								1
AAAAGG/CCTTTT	6	2																																																																							8
AAAATC/ATTTTG	2																																																																								2
AAAATG/ATTTTC	1																																																																								1
AAACAG/CTGTTT			1																																																																						1
AAACCC/GGGTTT	5																																																																								5
AAACCG/CGGTTT	1																																																																								1
AAACGC/CGTTTG	2																																																																								2
AAACGG/CCGTTT	1																																																																								1
AAACTC/AGTTTG	1																																																																								1
AAAGAC/CTTTGT		1																																																																							1
AAAGAG/CTCTTT	2	1	1																																																																						4
AAAGAT/ATCTTT	1																																																																								1
AAAGCC/CTTTGG	2																																																																								2
AAAGGC/CCTTTG	1	1																																																																							2
AAAGGG/CCCTTT	4		1																																																																						5
AAAGGT/ACCTTT	1																																																																								1
AAATAT/ATATTT	2																																																																								2
AAATCT/AGATTT	1																																																																								1
AAATGG/ATTTCC	4																																																																								4
AAATGT/ACATTT	1																																																																								1
AACAAT/ATTGTT																																					1																																				1
AACACC/GGTGTT	2	1	1																																																																						4
AACACT/AGTGTT		1																																																																							1
AACAGC/CTGTTG	9	2	1																																																																						12
AACAGG/CCTGTT	1																																																																								1
AACATC/ATGTTG	1																																																																								1
AACATG/ATGTTC	1																																																																								1
AACCAG/CTGGTT	2	1																																																																							3
AACCCC/GGGGTT	2																																																																								2
AACCCG/CGGGTT	1		1																																																																						2
AACCTC/AGGTTG	1																																																																								1
AACCTG/AGGTTC		1			1																																																																				2
AACGAG/CGTTCT	1																																																																								1
AACGCC/CGTTGG	1																																																																								1
AACGGC/CCGTTG	1																																																																								1
AACGGT/ACCGTT	1																																																																								1
AACTCT/AGAGTT	1																																																																								1
AACTGC/AGTTGC		1																																																																							1
AAGACC/CTTGGT	1																																																																								1
AAGACG/CGTCTT	2																																																																								2
AAGAGC/CTCTTG	2	1																																																																							3
AAGAGG/CCTCTT	6	3																																																																							9
AAGATG/ATCTTC	3			1	1																																																																				5
AAGCAC/CTTGTG	3																																																																								3
AAGCAG/CTGCTT	3				1																																																																				4
AAGCCC/CTTGGG	2																																																																								2
AAGCTC/AGCTTG	5	2																																																																							7
AAGCTG/AGCTTC	3																																																																								3
AAGGAC/CCTTGT	2	1																																																																							3
AAGGAG/CCTTCT	9	2																																																																							11
AAGGCC/CCTTGG	1																																																																								1
AAGGGC/CCCTTG	2		1																																																																						3
AAGGGG/CCCCTT	4	1																																																																							5
AAGGTC/ACCTTG	1																																																																								1
AAGTAC/ACTTGT	1																																																																								1
AAGTCC/ACTTGG	1																																																																								1
AAGTCT/ACTTAG		1																																																																							1
AAGTGG/ACTTCC			1																																																																						1
AATACC/ATTGGT	1																																																																								1
AATCAG/ATTCTG		1																																																																							1
AATCCC/ATTGGG	3																																																																								3
AATCCT/AGGATT	1																																																																								1
AATCGC/ATTGCG	1																																																																								1
AATCTC/AGATTG	1																																																																								1
AATCTG/AGATTC	2																																																																								2
AATGAC/ATTGTC		3																																																																							3
AATGAT/ATCATT	1																																																																								1
AATGCG/ATTCGC	1																																																																								1
AATGCT/AGCATT		1																																																																							1
AATGGC/ATTGCC	1																																																																								1
AATGGG/ATTCCC	3	1			1																																																																				5
AATGTG/ACATTC	1																																																																								1
AATTAC/AATTGT	2																																																																								2
AATTCC/AATTGG	1																																																																								1
ACACAG/CTGTGT	1																																																																								1
ACACCC/GGGTGT	4																																																																								4
ACACCG/CGGTGT	1																																																																								1
ACAGAG/CTCTGT	4																																																																								4
ACAGCC/CTGTGG	3																																																																								3
ACAGCG/CGCTGT	1																																																																								1
ACAGGG/CCCTGT	1																																																																								1
ACATAT/ATATGT	1																																																		1																						2
ACATCC/ATGTGG	2																																																																								2
ACATCG/ATGTCG	1																																																																								1
ACATCT/AGATGT	1	1																																																																							2
ACCACT/AGTGGT	2																																																																								2
ACCAGC/CTGGTG	4	2																																																																							6
ACCAGG/CCTGGT			1																																																																						1
ACCATC/ATGGTG	2																																																																								2
ACCATG/ATGGTC	1																																																																								1
ACCCAG/CTGGGT	1	1																																																																							2
ACCCAT/ATGGGT	4	1																																																																							5
ACCCCC/GGGGGT	5	1																																																																							6
ACCCCG/CGGGGT	2																																																																								2
ACCCGC/CGGGTG		2																																																																							2
ACCCGT/ACGGGT		1																																																																							1
ACCCTC/AGGGTG	1	1																																																																							2
ACCGAG/CGGTCT	1																																																																								1
ACCGCC/CGGTGG	5																																																																								5
ACCGCG/CGCGGT		1																																																																							1
ACCGCT/AGCGGT	1																																																																								1
ACCGGC/CCGGTG	2																																																																								2
ACCGGG/CCCGGT	3																																																																								3
ACCGGT/ACCGGT	2																																																																								2
ACCGTC/ACGGTG	1																																																																								1
ACCTCC/AGGTGG	6	3	1																																																																						10
ACCTGC/AGGTGC	2	1																																																																							3
ACGAGC/CGTGCT	2																																																																								2
ACGAGG/CCTCGT	5	1																																																																							6
ACGATG/ATCGTC	2																																																																								2
ACGCAG/CGTCTG	3		1																																																																						4
ACGCGC/CGCGTG	1																																																																								1
ACGGAG/CCGTCT		1																																																																							1
ACGGCG/CCGTCG	1																																																																								1
ACGGGC/CCCGTG	2																																																																								2
ACGGGG/CCCCGT	1																																																																								1
ACGTCG/ACGTCG	1																																																																								1
ACTATC/AGTGAT	1																																																																								1
ACTCCG/AGTCGG	1																																																																								1
ACTCCT/AGGAGT	1																																																																								1
ACTCGC/AGTGCG	1																																																																								1
ACTCGG/AGTCCG	2	1																																																																							3
ACTCTG/AGAGTC	2																																																																								2
ACTGAG/AGTCTC	2																																																																								2
ACTGCT/AGCAGT	1																																																																								1
AGAGCC/CTCTGG	2																																																																								2
AGAGGG/CCCTCT	7	1																																																																							8
AGATCC/ATCTGG	1																																																																								1
AGATCG/ATCTCG	1																																																																								1
AGATGG/ATCTCC	3																																																																								3
AGCAGG/CCTGCT	2	1																																																																							3
AGCATC/ATGCTG	2																																																																								2
AGCCAT/ATGGCT	1																																																																								1
AGCCCC/CTGGGG	1	2																																																																							3
AGCCTC/AGGCTG	2																																																																								2
AGCCTG/AGGCTC	5	1																																																																							6
AGCGCC/CGCTGG	1																																																																								1
AGCGCG/CGCGCT	1																																																																								1
AGCGGC/CCGCTG	1																																																																								1
AGCGGG/CCCGCT	4																																																																								4
AGCTCC/AGCTGG	3	1																																																																							4
AGGATC/ATCCTG	1																																																																								1
AGGATG/ATCCTC	8	4															1																																																								13
AGGCGC/CCTGCG	2																																																																								2
AGGCGG/CCGCCT	2																																																																								2
AGGGCG/CCCTCG	1																																																																								1
AGGGGC/CCCCTG	3	1																																																																							4
AGGGGG/CCCCCT	22	8	1																																																																						31
ATATCC/ATATGG	1																																																																								1
ATCATG/ATCATG	1																																																																								1
ATCCCC/ATGGGG	5	1	1																																																																						7
ATCCGG/ATCCGG	1																																																																								1
ATCGCC/ATGGCG	1																																																																								1
ATCGGC/ATGCCG	1																																																																								1
ATGCCC/ATGGGC	1	2																																																																							3
ATGCGC/ATGCGC	1																																																																								1
CCCCCG/CGGGGG	4																																																																								4
CCCCGG/CCGGGG	1																																																																								1
CCCGGG/CCCGGG	1																																																																								1
CCGGCG/CCGGCG	2																																																																								2
