Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_056278765.1/fasta/hub_GCA_056278765.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              73
Total size of examined sequences (bp):           9151687
Total number of identified SSRs:                 1201
Number of SSR containing sequences:              39
Number of sequences containing more than 1 SSR:  34
Number of SSRs present in compound formation:    323


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	124
2	301
3	300
4	31
5	198
6	247

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	9	8	5	8	3	2	2	1	1		2							1																									50
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1		1																								1																4
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	9	18	10	6	9	3	4	4	1				3	1				1	1																									70
AT	-	-	-	59	25	14	11	11	9	6	7	3	3	2	1	1	1																																												153
CT	-	-	-	1																																																									1
GT	-	-	-	1																																																									1
TA	-	-	-	55	28	17	8	7	10	4	6	4	1	1		1			1																																										143
TG	-	-	-	1	1								1																																																3
AAC	-	-		1																																																									1
AAG	-	-	3																																																										3
AAT	-	-	13	1		1	1		1			1								1			1																																						20
ACA	-	-	2	1								1	1									1			1																																				7
ACC	-	-	1		1																																																								2
ACT	-	-		2	1																																																								3
AGA	-	-	1																																																										1
AGG	-	-	1																																																										1
AGT	-	-	1																																																										1
ATA	-	-	7	6	2	2	2			2		1		1																																															23
ATC	-	-	2	3			1			1																																																			7
ATG	-	-		1	1	1		1												1								1																																	6
ATT	-	-	15	9	1	2	1		1	1	1		1								1																						1																		34
CAA	-	-	2		1																																																								3
CAC	-	-	7	3	6	2		1																																																					19
CAT	-	-		2	1																																																								3
CCA	-	-		1							1																																																		2
CTT	-	-					2																																																						2
GAA	-	-	2	1	1					1																																																			5
GAT	-	-	2			1	1					1																																																	5
GCT	-	-	2																																																										2
GGA	-	-		1																																																									1
GGT	-	-	1	1																																																									2
GTA	-	-	10	6	4	1																																																							21
GTG	-	-	3	1				1																																																					5
GTT	-	-	5					2		1																																																			8
TAA	-	-	9	3	3									1								1																																							17
TAC	-	-			1																																																								1
TAT	-	-	16	2	5	2	2	1	2	1	1	2	1	1	1			2							1																																			1	41
TCA	-	-	2	2	1							1																		1																															7
TCT	-	-		1																																																									1
TGA	-	-		1			1					1													1																																				4
TGC	-	-						1																																																					1
TGG	-	-	2	1	1																																																								4
TGT	-	-				2					1		1																																																4
TTA	-	-	16	5		1	1								1	1		1																																											26
TTC	-	-	1	1																																																									2
TTG	-	-	2	1	1	1																																																							5
AAAG	-	1																																																											1
AAAT	-	4	1																																																										5
AATA	-	2																																																											2
ATAA	-	2																																																											2
ATGC	-	1	1																																																										2
ATTT	-	1																																																											1
CATG	-		1																																																										1
CTTT	-	1																																																											1
TAAA	-										1																																																		1
TATG	-	1																																																											1
TATT	-	3																																																											3
TGCA	-	2	2																																																										4
TTAT	-	1																																																											1
TTTA	-	3	2	1																																																									6
AAAAG	1																																																												1
AAAAT	3	2		1																																																									6
AAACT		1																																																											1
AAATA	7																																																												7
AAATG	1																																																												1
AAATT	1																																																												1
AACAA	1																																																												1
AACCT	20	3	2																																																										25
AACTA	1																																																												1
AATAA	4																																																												4
AATAT	5																																																												5
AATTT	2																																																												2
ACCTA	1	1																																																											2
AGATA	1																																																												1
ATAAA	1																																																												1
ATAAT	2	1																																																											3
ATATA	5	1	1																																																										7
ATATC	1																																																												1
ATATT	2																																																												2
ATTAA	1																																																												1
ATTAG	1																																																												1
CAATA	2																																																												2
CCTAA	4	4																																																											8
CTAAA	1																																																												1
CTAAC	5	1																																																											6
CTTTT	1																																																												1
GAAAA	1																																																												1
GATGA	1																																																												1
GGTTA	9																																																												9
GTCTC	1																																																												1
GTTAG	6																																																												6
GTTTA	3																																																												3
TAAAA	2																																																												2
TAATT	2																																																												2
TACTT	1																																																												1
TAGAT	1																																																												1
TAGGT	3		1																																																										4
TATAA	3																																																												3
TATAT	3																																																												3
TATTA	3																																																												3
TATTT	3																																																												3
TCTTT	1																																																												1
TGCAT		1																																																											1
TTAAA	1																																																												1
TTAGG	28	7		1		1																																																							37
TTAGT	2																																																												2
TTATA	1																																																												1
TTATT	6	1																																																											7
TTTAT	5																																																												5
TTTCT	2																																																												2
TTTTA	5																																																												5
TTTTC	1																																																												1
AAAAAT	4				1																																																								5
AAACCT	1																																																												1
AAAGAA	1																																																												1
AAATTA	1																																																												1
AACCAG	1																																																												1
AACCTA	14	4	1																																																										19
AACCTT	1																																																												1
AACTAA	1																																																												1
AACTAC	3																																																												3
AAGAAA	1		1																																																										2
AAGAAC	1																																																												1
AATAAG	1																																																												1
ACAAAA	1																																																												1
ACAACT	5																																																												5
ACTACA	1																																																												1
AGAAGT				1																																																									1
AGAATA		1																																																											1
AGCCAG	1																																																												1
AGGATA	1																																																												1
AGTTGT				2																																																									2
ATAAAA	1																																																												1
ATAAAC	1																																																												1
ATAACT	2																																																												2
ATAATG		1																																																											1
ATACCC		1																																																											1
ATACTT	1																																																												1
ATATAA	2																																																												2
ATATAC	1																																																												1
ATCTTT	1																																																												1
ATGAAG		1																																																											1
ATGATA	1																																																												1
ATTATA	1																																																												1
ATTATC	1			1																																																									2
ATTATG		1																																																											1
ATTCTA	1		1		1																																																								3
ATTCTT	1																																																												1
ATTGGG					1																																																								1
ATTGTT		1																																																											1
ATTTTT	1																																																												1
CAAAAT		1																																																											1
CAACTA	2	1	1		2	2																																																							8
CAATCA		1																																																											1
CACCAT	2		1																																																										3
CAGAGC		1																																																											1
CCATCA	1																																																												1
CCATTA		1																																																											1
CCTAAA	3	5	1																																																										9
CTAAAC	8	4																																																											12
CTAATA	1																																																												1
CTATTA	1																																																												1
CTCCAC	1																																																												1
CTGCAG	1																																																												1
CTGGAG	1																																																												1
CTTATT			1																																																										1
CTTTAA	1																																																												1
GAACAA	1																																																												1
GAACTA	1	1																																																											2
GGTTTA	10	3	1																																																										14
GTAGTT	3	2	3		1																																																								9
GTATTA	1																																																												1
GTCTAA	1																																																												1
GTTGAA	1																																																												1
GTTGTA	5	1	2																																																										8
GTTTAG	3	1																																																											4
GTTTTT							1																																																						1
TAATTC	1																																																												1
TACTTA	1																																																												1
TAGGTT	9	1																																																											10
TAGTAA	1																																																												1
TATAAA	1																																																												1
TATAAG	1																																																												1
TATACA	1																																																												1
TATATC	1																																																												1
TATCTC									1																																																				1
TATCTT	1																																																												1
TATTTA	1																																																												1
TATTTT	1																																																												1
TCATCC		1																																																											1
TCATTA		1																																																											1
TCCTCT	1																																																												1
TCCTGG	1																																																												1
TCTTCA	1																																																												1
TCTTGT						1																																																							1
TGATTC	2		1	1																																																									4
TGTGCT															1																																														1
TGTTGG	1																																																												1
TTAATA	1																																																												1
TTAGGT	23	6	2	2		1																																																							34
TTATCA	1	1																																																											2
TTATCT	1																																																												1
TTCTCT	3				1																																																								4
TTGTAT		1																																																											1
TTGTCC						1																																																							1
TTTAAC	1																																																												1
TTTAAT	1																																																												1
TTTACC			1																																																										1
TTTAGA		1	1																																																										2
TTTATA		1																																																											1
TTTCAC	1																																																												1
TTTGTC	1																																																												1
TTTTAA	1																																																												1
TTTTTA	1																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	17	27	18	11	17	6	6	6	2	1		2	3	1				1	2																									120
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1		1																								1																4
AC/GT	-	-	-	2	1								1																																																4
AG/CT	-	-	-	1																																																									1
AT/AT	-	-	-	114	53	31	19	18	19	10	13	7	4	3	1	2	1		1																																										296
AAC/GTT	-	-	11	3	2	3		2		1	1	1	2									1			1																																				28
AAG/CTT	-	-	7	3	1		2			1																																																			14
AAT/ATT	-	-	76	26	11	8	7	1	4	4	2	4	2	3	2	1		3		1	1	1	1		1																		1																	1	161
ACC/GGT	-	-	14	7	8	2		2			1																																																		34
ACT/AGT	-	-	11	8	6	1																																																							26
AGC/CTG	-	-	2					1																																																					3
AGG/CCT	-	-	1	1																																																									2
ATC/ATG	-	-	6	9	3	2	3	1		1		3								1					1			1		1																															32
AAAG/CTTT	-	2																																																											2
AAAT/ATTT	-	16	3	1							1																																																		21
ACAT/ATGT	-	1																																																											1
ATGC/ATGC	-	3	4																																																										7
AAAAC/GTTTT	1																																																												1
AAAAG/CTTTT	7																																																												7
AAAAT/ATTTT	36	3		1																																																									40
AAACT/AGTTT	7	1																																																											8
AAAGT/ACTTT	1																																																												1
AAATG/ATTTC	1																																																												1
AAATT/AATTT	7																																																												7
AACCT/AGGTT	76	16	3	1		1																																																							97
AAGAT/ATCTT	1																																																												1
AATAC/ATTGT	2																																																												2
AATAT/ATATT	24	2	1																																																										27
AATCT/AGATT	2																																																												2
AATGC/ATTGC		1																																																											1
ACGAG/CGTCT	1																																																												1
AGATG/ATCTC	1																																																												1
ATATC/ATATG	1																																																												1
AAAAAC/GTTTTT	1						1																																																						2
AAAAAG/CTTTTT	2		1																																																										3
AAAAAT/ATTTTT	8				1																																																								9
AAAACT/AGTTTT	1																																																												1
AAAATC/ATTTTG		1																																																											1
AAAATT/AATTTT	3																																																												3
AAACAT/ATGTTT	1																																																												1
AAACCT/AGGTTT	71	24	5	2		1																																																							103
AAAGAC/CTTTGT	1																																																												1
AAAGAG/CTCTTT	3				1																																																								4
AAAGAT/ATCTTT	3																																																												3
AAAGGT/ACCTTT			1																																																										1
AAAGTG/ACTTTC	1																																																												1
AAAGTT/AACTTT	2																																																												2
AAATAC/ATTTGT		1																																																											1
AAATAT/ATATTT	4	1																																																											5
AAATCT/AGATTT		1	1																																																										2
AACAAG/CTTGTT	2					1																																																							3
AACAAT/ATTGTT		1																																																											1
AACACC/GGTGTT	1																																																												1
AACCAG/CTGGTT	1																																																												1
AACCTT/AAGGTT	1																																																												1
AACTAC/AGTTGT	19	4	6	2	3	2																																																							36
AACTAG/AGTTCT	1	1																																																											2
AACTAT/AGTTAT	2																																																												2
AACTTC/AAGTTG	1																																																												1
AAGAAT/ATTCTT	2	1	1																																																										4
AAGAGG/CCTCTT	1																																																												1
AAGATG/ATCTTC	1	1																																																											2
AAGCAC/CTTGTG															1																																														1
AAGGAC/CCTTGT						1																																																							1
AAGGAT/ATCCTT	1																																																												1
AAGTAG/ACTTCT				1																																																									1
AAGTAT/ACTTAT	3																																																												3
AAGTCT/ACTTAG	1																																																												1
AATACT/AGTATT	2																																																												2
AATAGT/ACTATT	2																																																												2
AATATT/AATATT	1																																																												1
AATCAC/ATTGTG		1																																																											1
AATCAG/ATTCTG	2		1	1																																																									4
AATCAT/ATGATT		1																																																											1
AATCCC/ATTGGG					1																																																								1
AATGAT/ATCATT	3	3		1																																																									7
AATGGT/ACCATT		1																																																											1
AATTAG/AATTCT	2		1		1																																																								4
AATTAT/AATTAT	1																																																												1
ACATAT/ATATGT	2																																																												2
ACCAGG/CCTGGT	1																																																												1
ACCATC/ATGGTG	3		1																																																										4
ACCCAT/ATGGGT		1																																																											1
ACCTCC/AGGTGG	1																																																												1
AGAGAT/ATCTCT									1																																																				1
AGAGCC/CTCTGG	1	1																																																											2
AGATAT/ATATCT	1																																																												1
AGCTCC/AGCTGG	1																																																												1
AGCTGC/AGCTGC	1																																																												1
AGGATG/ATCCTC		1																																																											1
