Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-61/megassr/results/hub_GCA_056262065.1/fasta/hub_GCA_056262065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              178
Total size of examined sequences (bp):           6611483
Total number of identified SSRs:                 46
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	8
5	14
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
GC	-	-	-	1										1
CCG	-	-	1											1
CGC	-	-	2											2
CGG	-	-	2											2
GGT	-	-	1											1
GTG	-	-	1											1
TTG	-	-		1										1
CCAGG	1													1
CCTGC	1													1
CGCCG	3													3
CGCGC	1													1
CGGCG	2													2
CTCGC	1													1
CTTCC		1												1
GCGCC		1												1
GCGGC	1													1
GGCCT	1													1
GGCGC	1													1
ACAGCC													1	1
ATCACG							1							1
ATGGCC	1													1
CAGCGC	1													1
CAGGAA	1													1
CCAGCG	1													1
CCAGGG	1													1
CCGAGC				1				1						2
CCTCGG	1													1
CCTGAC	1													1
CCTGGG	1													1
CGCCAG	1													1
CGCTGT	1													1
CGTCGG		1												1
CTGCGC	1													1
GCAGGC	1													1
GCCACC	1													1
GCCTGC	1													1
GCGCCT	1													1
GGCCTT	1													1
GGCGCG	1													1
GTTGGC						1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	1										1
AAC/GTT	-	-		1										1
ACC/GGT	-	-	2											2
CCG/CGG	-	-	5											5
AAGGG/CCCTT		1												1
AGGCC/CCTGG	2													2
AGGCG/CCTCG	1													1
AGGGC/CCCTG	1													1
CCGCG/CGCGG	8	1												9
AACAGG/CCTGTT	1													1
AACGCC/CGTTGG						1								1
AAGGCC/CCTTGG	1													1
ACAGCC/CTGTGG													1	1
ACAGCG/CGCTGT	1													1
ACCCTG/AGGGTC	1													1
ACCGCC/CGGTGG	1													1
ACGATC/ATCGTG							1							1
ACGCCG/CGGCGT		1												1
AGCCCG/CGGGCT				1				1						2
AGCGCC/CGCTGG	3													3
AGGCCC/CCTGGG	1													1
AGGCCG/CCTCGG	1													1
AGGCGC/CCTGCG	4													4
AGGGCC/CCCTGG	1													1
ATGGCC/ATGGCC	1													1
CCCGCG/CGCGGG	1													1
