Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-60/megassr/results/hub_GCA_056261805.1/fasta/hub_GCA_056261805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              122
Total size of examined sequences (bp):           6196336
Total number of identified SSRs:                 53
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	6
5	14
6	32

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GC	-	-	-	1								1
CAC	-	-	1									1
CGG	-	-	2									2
GCG	-	-	2									2
GGT	-	-	1									1
CCTGG	1											1
CGCCG	1											1
CGGCG	2											2
GCCGT	1											1
GCCTG	1											1
GCGCT	1											1
GCGGC	2											2
GCTGA					1							1
GGCGA	1											1
GGCGC	1											1
GGTGG	1											1
TGCCG	1											1
AAGGCC	1											1
ATGGCC	1											1
CAGCGC		1										1
CAGGCC	1											1
CAGGCG	1											1
CCACCG	1											1
CCAGGG	1											1
CCGACG	1											1
CCGAGC											1	1
CCGAGG	1											1
CCTGCT	1											1
CCTGGG	1											1
CGCCCT	1											1
CGCCGA		1										1
CGCTGG	1											1
CGCTGT	1											1
CGGCGC		1										1
CGGGCT				1								1
CGTGAT								1				1
CGTGGT		1										1
GCCCAG			1									1
GCCTGC	2											2
GCCTGG	1											1
GGAAGG	1											1
GGCGCT	1											1
GGGCCA	1											1
TCGGCG	1											1
TGCTGG	1											1
TGGCTG										1		1
TGTCCG		1										1
TGTTCC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	1								1
ACC/GGT	-	-	2									2
CCG/CGG	-	-	4									4
ACCCC/GGGGT	1											1
ACGGC/CCGTG	2											2
AGCGC/CGCTG	1											1
AGCTC/AGCTG					1							1
AGGCC/CCTGG	2											2
AGGCG/CCTCG	1											1
CCGCG/CGCGG	6											6
AACAGG/CCTGTT	1											1
AAGGCC/CCTTGG	1											1
AAGGGG/CCCCTT	1											1
ACACGG/CCGTGT		1										1
ACAGCC/CTGTGG										1		1
ACAGCG/CGCTGT	1											1
ACCACG/CGTGGT		1										1
ACCAGC/CTGGTG	1											1
ACCGCC/CGGTGG	1											1
ACGATC/ATCGTG								1				1
ACGCCG/CGGCGT	2	1										3
AGCAGG/CCTGCT	1											1
AGCCCG/CGGGCT				1							1	2
AGCGCC/CGCTGG	2	1										3
AGGCCC/CCTGGG	3		1									4
AGGCCG/CCTCGG	1											1
AGGCGC/CCTGCG	3											3
AGGGCC/CCCTGG	2											2
AGGGCG/CCCTCG	1											1
ATGGCC/ATGGCC	1											1
CCGGCG/CCGGCG		1										1
