Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-59/megassr/results/hub_GCA_056261725.1/fasta/hub_GCA_056261725.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              160
Total size of examined sequences (bp):           6597891
Total number of identified SSRs:                 52
Number of SSR containing sequences:              31
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	10
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
GC	-	-	-	3							3
CGG	-	-	4								4
GCC	-	-	1								1
GCG	-	-	3								3
GGT	-	-	1								1
GTG	-	-	1								1
CGCCG	3										3
CGCGC	1										1
CGCGG	1										1
CGGCG	1										1
CTCGC	1										1
GCCTG	1										1
GCGCC	1										1
GCGGC	1										1
GGCGC	1										1
ACCGGC	1										1
AGCGCC	1										1
ATGGCC	1										1
CAGGAA	1										1
CCAGCG	1										1
CCAGGG	1										1
CCGAGC			1								1
CCGAGG	1										1
CCTGAC	1										1
CCTGGG	1										1
CGCCCT	1										1
CGCTGG	1										1
CGCTGT	1										1
CGTCGG				1							1
CGTGAT					1						1
GCAGGC	1										1
GCCCAG	1										1
GCCGGG		1									1
GCCTGC	1										1
GCCTGG	1										1
GCGCCG	1										1
GCGCTA	1										1
GGCCAG	1										1
GGCCTT	1										1
GGCTCG										1	1
GTTGGC	1										1
TCGTGG	1										1
TGGCTG						1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	3							3
ACC/GGT	-	-	2								2
CCG/CGG	-	-	8								8
AGGCC/CCTGG	1										1
AGGCG/CCTCG	1										1
CCGCG/CGCGG	9										9
AACAGG/CCTGTT	1										1
AACGCC/CGTTGG	1										1
AAGGCC/CCTTGG	1										1
ACAGCC/CTGTGG						1					1
ACAGCG/CGCTGT	1										1
ACCACG/CGTGGT	1										1
ACCCTG/AGGGTC	1										1
ACCGGC/CCGGTG	1										1
ACGATC/ATCGTG					1						1
ACGCCG/CGGCGT				1							1
AGCCCG/CGGGCT			1							1	2
AGCGCC/CGCTGG	3										3
AGCGCT/AGCGCT	1										1
AGGCCC/CCTGGG	3										3
AGGCCG/CCTCGG	1										1
AGGCGC/CCTGCG	2										2
AGGGCC/CCCTGG	2										2
AGGGCG/CCCTCG	1										1
ATGGCC/ATGGCC	1										1
CCCCGG/CCGGGG		1									1
CCGGCG/CCGGCG	1										1
