Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-59/megassr/results/hub_GCA_055680295.1/fasta/hub_GCA_055680295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              62
Total size of examined sequences (bp):           4509558
Total number of identified SSRs:                 22
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	5	5
GC	-	-	-	1	1
AGC	-	-	1		1
CCG	-	-	1	1	2
CGC	-	-	1		1
CGG	-	-	2		2
GCA	-	-		1	1
GCG	-	-	1		1
GGC	-	-		1	1
CGCGG	1				1
GCGCG	1				1
CCGGAG		1			1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
TGATAC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	6	6
AGC/CTG	-	-	1	1	2
CCG/CGG	-	-	5	2	7
CCGCG/CGCGG	2				2
AAGTCG/ACTTCG	1				1
ACTGAT/AGTATC	1				1
AGCCGG/CCGGCT		1			1
AGCGCC/CGCTGG	2				2
