Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-57/megassr/results/hub_GCA_055680215.1/fasta/hub_GCA_055680215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              137
Total size of examined sequences (bp):           4489299
Total number of identified SSRs:                 22
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	8
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	3						3
GC	-	-	-	1			1			2
AGC	-	-	1							1
CCG	-	-	1							1
CGC	-	-	1							1
CGG	-	-	1							1
GCA	-	-							1	1
GCG	-	-	2							2
GGC	-	-		1						1
CGCGG	1									1
GCGCG	1									1
TGCGC	1									1
CACGAC									1	1
CGACTT	1									1
CGCCAG	1									1
CGGCAA	1									1
CTGGCG	1									1
GCCAGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	4			1			5
AGC/CTG	-	-	1						1	2
CCG/CGG	-	-	5	1						6
AGCGC/CGCTG	1									1
CCGCG/CGCGG	2									2
AACGGC/CCGTTG	1									1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT									1	1
AGCGCC/CGCTGG	3									3
