Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-55/megassr/results/hub_GCA_055680115.1/fasta/hub_GCA_055680115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              56
Total size of examined sequences (bp):           4462172
Total number of identified SSRs:                 26
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	10
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	4		1				5
GC	-	-	-	2				1		3
CCG	-	-	1	1						2
CGG	-	-	2							2
GCA	-	-				1				1
GCC	-	-	1							1
GCG	-	-	2							2
GCT	-	-	1							1
GGC	-	-		1						1
CGCGG	1									1
GCGCA	1									1
GCGCG	1									1
GCGGC	1									1
CACGAC									1	1
CTGGCG	1									1
GAAGTC	1									1
GCCAGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	6		1		1		8
AGC/CTG	-	-	1			1				2
CCG/CGG	-	-	6	2						8
AGCGC/CGCTG	1									1
CCGCG/CGCGG	3									3
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT									1	1
AGCGCC/CGCTGG	2									2
