Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-52/megassr/results/hub_GCA_055679995.1/fasta/hub_GCA_055679995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              47
Total size of examined sequences (bp):           4698791
Total number of identified SSRs:                 21
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	3				3
GC	-	-	-	2				2
TA	-	-	-	1				1
CCG	-	-	2					2
CGG	-	-	1					1
CTG	-	-	1				1	2
GCC	-	-	1					1
GCG	-	-	1					1
GCT	-	-	1					1
GGCGC	1							1
TATTT	1							1
AAGAAC	1							1
CCATGA						1		1
CGACTT	1							1
CTGGCG	1							1
GCCAGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
CG/CG	-	-	-	5				5
AGC/CTG	-	-	2				1	3
CCG/CGG	-	-	5					5
AAAAT/ATTTT	1							1
CCGCG/CGCGG	1							1
AACAAG/CTTGTT	1							1
AAGTCG/ACTTCG	1							1
ACCATG/ATGGTC						1		1
AGCGCC/CGCTGG	2							2
