Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCA_055679975.1/fasta/hub_GCA_055679975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           4588820
Total number of identified SSRs:                 26
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
5	2
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3			3
GC	-	-	-	2			2
TA	-	-	-	1			1
CCG	-	-		1			1
CGG	-	-	2				2
GCA	-	-	1				1
GCC	-	-	1				1
GCG	-	-	2				2
GCT	-	-	1				1
CGCGG	1						1
GCGCG	1						1
CAACAG	1						1
CACGAC						1	1
CCGCGG	1						1
CGACTT	1						1
CTGGCG	1						1
GCCAGC	1						1
GCGGTA	1						1
GGCTCC	1						1
TGATAC	1						1
TTCCGG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5			5
AGC/CTG	-	-	2				2
CCG/CGG	-	-	5	1			6
CCGCG/CGCGG	2						2
AACAGC/CTGTTG	1						1
AACCGG/CCGGTT	1						1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT						1	1
ACCGCT/AGCGGT	1						1
ACTGAT/AGTATC	1						1
AGCCGG/CCGGCT	1						1
AGCGCC/CGCTGG	2						2
CCGCGG/CCGCGG	1						1
