Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-49/megassr/results/hub_GCA_055679875.1/fasta/hub_GCA_055679875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           4759347
Total number of identified SSRs:                 30
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	9
4	1
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	5	5
GC	-	-	-	2	2
TA	-	-	-	1	1
CCG	-	-	2		2
CGC	-	-	1	1	2
CGG	-	-	1		1
CTG	-	-	1		1
GCC	-	-	1		1
GCG	-	-	1		1
GCT	-	-	1		1
GCCA	-	1			1
CGCGC	1				1
CGCGG	1				1
GGCGC	1				1
ACAGGC	1				1
ACCACG				1	1
CGACTT	1				1
CGCCCG	1				1
CTGGAC	1				1
CTGGCG	1				1
GCCAGC	1				1
TAAAAA	1				1
TTCCTG				1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	7	7
AGC/CTG	-	-	2		2
CCG/CGG	-	-	6	1	7
AGCC/CTGG	-	1			1
CCGCG/CGCGG	3				3
AAAAAT/ATTTTT	1				1
AACAGG/CCTGTT				1	1
AAGTCG/ACTTCG	1				1
ACAGGC/CCTGTG	1				1
ACCACG/CGTGGT				1	1
ACCTGG/AGGTCC	1				1
AGCGCC/CGCTGG	2				2
CCCGCG/CGCGGG	1				1
