Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-44/megassr/results/hub_GCA_055679655.1/fasta/hub_GCA_055679655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              43
Total size of examined sequences (bp):           4734269
Total number of identified SSRs:                 25
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	1
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	4									4
GC	-	-	-	2									2
AGC	-	-	1										1
ATG	-	-	1										1
CCG	-	-	2										2
CGG	-	-	1										1
CTG	-	-										1	1
GCC	-	-	1										1
GCG	-	-	2										2
GCCA	-	1											1
CGCGC	1												1
CGCGG	1												1
GGCGC	1												1
TGCGC	1												1
AAATAC		1											1
CCATGA			1										1
CGACTT	1												1
CTGGCG	1												1
GCTGGC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	6									6
AGC/CTG	-	-	1									1	2
ATC/ATG	-	-	1										1
CCG/CGG	-	-	6										6
AGCC/CTGG	-	1											1
AGCGC/CGCTG	1												1
CCGCG/CGCGG	3												3
AAATAC/ATTTGT		1											1
AAGTCG/ACTTCG	1												1
ACCATG/ATGGTC			1										1
AGCGCC/CGCTGG	2												2
