Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCA_055679635.1/fasta/hub_GCA_055679635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              32
Total size of examined sequences (bp):           4570565
Total number of identified SSRs:                 25
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	9
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	4		1					5
GC	-	-	-	2							2
TA	-	-	-	1							1
CGG	-	-	2	1							3
GCA	-	-								1	1
GCC	-	-	1								1
GCG	-	-	2								2
GCT	-	-	1								1
GGC	-	-		1							1
CGCGG	1										1
GCGCC	1										1
GCGCG	1										1
CAACAG	1										1
CACGAC								1			1
CTGGCG	1										1
GAAGTC	1										1
GCCAGC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	6		1					7
AGC/CTG	-	-	1							1	2
CCG/CGG	-	-	5	2							7
CCGCG/CGCGG	3										3
AACAGC/CTGTTG	1										1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT								1			1
AGCGCC/CGCTGG	2										2
