Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCA_055679475.1/fasta/hub_GCA_055679475.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              108
Total size of examined sequences (bp):           4958841
Total number of identified SSRs:                 27
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	1						1
CG	-	-	-	3		1				4
GC	-	-	-	1						1
AGC	-	-	1							1
CCG	-	-	2							2
CGG	-	-	2							2
GCG	-	-	2							2
GGT	-	-	1							1
TGG	-	-	1							1
GCCA	-	1								1
ATAAA	1									1
CGCGG	1									1
GCGCG	1									1
GGCGC	1									1
ACAGGC						1				1
CACGAC		1								1
CGACTT	1									1
CTGGCG	1									1
GCAGGA									1	1
GCCAGC	1									1
GCGTGT	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	4		1				5
ACC/GGT	-	-	2							2
AGC/CTG	-	-	1							1
CCG/CGG	-	-	6							6
AGCC/CTGG	-	1								1
AAAAT/ATTTT	1									1
CCGCG/CGCGG	3									3
AAGTCG/ACTTCG	1									1
ACACGC/CGTGTG	1									1
ACAGGC/CCTGTG						1				1
ACCACG/CGTGGT		1								1
AGCAGG/CCTGCT									1	1
AGCGCC/CGCTGG	2									2
