Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-35/megassr/results/hub_GCA_055679355.1/fasta/hub_GCA_055679355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              117
Total size of examined sequences (bp):           4688602
Total number of identified SSRs:                 25
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	3				3
GC	-	-	-	1				1
AGC	-	-	1					1
CCG	-	-	2					2
CGC	-	-	1					1
CGG	-	-	3					3
GGT	-	-			1			1
TGG	-	-	1					1
GCCA	-	1						1
AGGGA	1							1
CGCGG	1							1
GCGCG	1							1
GGCGC	1							1
ATTGAT	1							1
CACGAC							1	1
CAGCGC	1							1
CGACTT	1							1
CTGGCG	1							1
GCCAGC	1							1
TTGACC				1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	4				4
ACC/GGT	-	-	1		1			2
AGC/CTG	-	-	1					1
CCG/CGG	-	-	6					6
AGCC/CTGG	-	1						1
AAGGG/CCCTT	1							1
CCGCG/CGCGG	3							3
AAGGTC/ACCTTG				1				1
AAGTCG/ACTTCG	1							1
AATATC/ATATTG	1							1
ACCACG/CGTGGT							1	1
AGCGCC/CGCTGG	3							3
