Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-33/megassr/results/hub_GCA_055678175.1/fasta/hub_GCA_055678175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           4713287
Total number of identified SSRs:                 25
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT	-	-	-	1							1
CG	-	-	-	3							3
GC	-	-	-	2							2
AGC	-	-	1								1
CAC	-	-		1							1
CGG	-	-	1								1
GCC	-	-	1								1
GCG	-	-	2								2
TAA	-	-	1								1
GCCA	-	1									1
TAAA	-	1									1
CGCGC	1										1
GGCGC	1										1
ACCGAG							1				1
ATGAAG							1				1
CACGAC										1	1
CGACTT	1										1
CTGGCG	1										1
GCTGGC	1										1
GGCTGT	1										1
TGATGC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	5							5
AAT/ATT	-	-	1								1
ACC/GGT	-	-		1							1
AGC/CTG	-	-	1								1
CCG/CGG	-	-	4								4
AAAT/ATTT	-	1									1
AGCC/CTGG	-	1									1
CCGCG/CGCGG	2										2
AAGATG/ATCTTC							1				1
AAGTCG/ACTTCG	1										1
ACAGCC/CTGTGG	1										1
ACCACG/CGTGGT										1	1
ACCGAG/CGGTCT							1				1
AGCATC/ATGCTG	1										1
AGCGCC/CGCTGG	2										2
