Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-32/megassr/results/hub_GCA_055678135.1/fasta/hub_GCA_055678135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              21
Total size of examined sequences (bp):           4530113
Total number of identified SSRs:                 28
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	10
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	5								5
GC	-	-	-	2								2
CCG	-	-	1									1
CGG	-	-	2	1								3
GCA	-	-									1	1
GCC	-	-	1									1
GCG	-	-	2									2
GCT	-	-	1									1
GGC	-	-		1								1
CGCGC	1											1
GCGCG	1											1
GGCGC	1											1
CACGAC								1				1
CCGCAG	1											1
CGACTT	1											1
CGGCAA	1											1
CTGGCG	1											1
CTGTTG	1											1
GATGAA				1								1
GCCAGC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	7								7
AGC/CTG	-	-	1								1	2
CCG/CGG	-	-	6	2								8
CCGCG/CGCGG	3											3
AACAGC/CTGTTG	1											1
AACGGC/CCGTTG	1											1
AAGATG/ATCTTC				1								1
AAGTCG/ACTTCG	1											1
ACCACG/CGTGGT								1				1
AGCCGC/CGGCTG	1											1
AGCGCC/CGCTGG	2											2
