Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCA_055678015.1/fasta/hub_GCA_055678015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              21
Total size of examined sequences (bp):           4516352
Total number of identified SSRs:                 23
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG	-	-	-	5												5
GC	-	-	-	1												1
CCG	-	-	1													1
CGC	-	-	1													1
CGG	-	-	2	1												3
GCA	-	-				1										1
GCG	-	-	1													1
GCT	-	-	1													1
GGC	-	-		1												1
CGCGG	1															1
GCGCG	1															1
CACGAC															1	1
CGACTT	1															1
CTGGCG	1															1
GCCAGC	1															1
GCTCCG		1														1
TGATAC	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG/CG	-	-	-	6												6
AGC/CTG	-	-	1			1										2
CCG/CGG	-	-	5	2												7
CCGCG/CGCGG	2															2
AAGTCG/ACTTCG	1															1
ACCACG/CGTGGT															1	1
ACTGAT/AGTATC	1															1
AGCCGG/CCGGCT		1														1
AGCGCC/CGCTGG	2															2
