Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-120/megassr/results/hub_GCA_054649635.1/fasta/hub_GCA_054649635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              69
Total size of examined sequences (bp):           1931592
Total number of identified SSRs:                 22
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	2
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AG	-	-	-															1	1
ATT	-	-	1																1
GAT	-	-	1																1
TGG	-	-	1																1
ATTA	-	1																	1
ATTT	-	1																	1
AAAAC	1																		1
AATAT	1																		1
ATAAA	1																		1
TAATT	1																		1
TATTT	1																		1
TTAAA	1																		1
TTATA	1																		1
AAACCA	1																		1
AAAGCA	1																		1
AAATCA	1																		1
AGAAAA	1																		1
GAAAAA	1																		1
GCATAA	1																		1
GCGGTG		1																	1
TTTATC	1																		1
TTTATG		1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AG/CT	-	-	-															1	1
AAT/ATT	-	-	1																1
ACC/GGT	-	-	1																1
ATC/ATG	-	-	1																1
AAAT/ATTT	-	1																	1
AATT/AATT	-	1																	1
AAAAC/GTTTT	1																		1
AAAAT/ATTTT	2																		2
AAATT/AATTT	2																		2
AATAT/ATATT	2																		2
AAAAAG/CTTTTT	2																		2
AAAACC/GGTTTT	1																		1
AAAAGC/CTTTTG	1																		1
AAAATC/ATTTTG	1																		1
AAACAT/ATGTTT		1																	1
AAAGAT/ATCTTT	1																		1
AAGCAT/ATGCTT	1																		1
ACCGCC/CGGTGG		1																	1
