Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-115/megassr/results/hub_GCA_054649535.1/fasta/hub_GCA_054649535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              107
Total size of examined sequences (bp):           1998361
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
5	9
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG	-	-	-											1	1
ATT	-	-	1												1
TGG	-	-	1												1
AAAT	-	1													1
AATAT	1														1
ATAAA	1														1
ATGCG	1														1
GTTTT	1														1
TAATT	1														1
TATTT	1														1
TTAAA	1														1
TTATA	1														1
TTTTC	1														1
AAACCA	1														1
AAATCA	1														1
GAAAAA	1														1
GCGGTG	1														1
TATTTT	1														1
TGCTTT	1														1
TTATGC	1														1
TTTATC	1														1
TTTATG	1														1
TTTTTC	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG/CT	-	-	-											1	1
AAT/ATT	-	-	1												1
ACC/GGT	-	-	1												1
AAAT/ATTT	-	1													1
AAAAC/GTTTT	1														1
AAAAG/CTTTT	1														1
AAAAT/ATTTT	2														2
AAATT/AATTT	2														2
AATAT/ATATT	2														2
ATCGC/ATGCG	1														1
AAAAAG/CTTTTT	2														2
AAAAAT/ATTTTT	1														1
AAAACC/GGTTTT	1														1
AAAAGC/CTTTTG	1														1
AAAATC/ATTTTG	1														1
AAACAT/ATGTTT	1														1
AAAGAT/ATCTTT	1														1
AAGCAT/ATGCTT	1														1
ACCGCC/CGGTGG	1														1
