Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-111/megassr/results/hub_GCA_054649355.1/fasta/hub_GCA_054649355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           1874438
Total number of identified SSRs:                 28
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	1
5	10
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CT	-	-	-									1	1
TA	-	-	-	1									1
ATT	-	-	1										1
TCT	-	-	1										1
TGG	-	-	1										1
TTC	-	-					1						1
AAAT	-	1											1
AATAT	1												1
ATAAA	1												1
ATGCG	1												1
GTTTT	1												1
TAATT	1												1
TATAA	1												1
TATTT	1												1
TTTAA	1												1
TTTAT	1												1
TTTTC	1												1
AAACCA	1												1
AAAGCA	1												1
CTTTAG	1												1
GAAAAA	1												1
GCGGTG	1												1
TATTTT	1												1
TGATTT	1												1
TTATGC	1												1
TTTAGC	1												1
TTTATC	1												1
TTTTTC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG/CT	-	-	-									1	1
AT/AT	-	-	-	1									1
AAG/CTT	-	-	1				1						2
AAT/ATT	-	-	1										1
ACC/GGT	-	-	1										1
AAAT/ATTT	-	1											1
AAAAC/GTTTT	1												1
AAAAG/CTTTT	1												1
AAAAT/ATTTT	3												3
AAATT/AATTT	2												2
AATAT/ATATT	2												2
ATCGC/ATGCG	1												1
AAAAAG/CTTTTT	2												2
AAAAAT/ATTTTT	1												1
AAAACC/GGTTTT	1												1
AAAAGC/CTTTTG	1												1
AAAATC/ATTTTG	1												1
AAAGAT/ATCTTT	1												1
AAAGCT/AGCTTT	2												2
AAGCAT/ATGCTT	1												1
ACCGCC/CGGTGG	1												1
