Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCA_054649055.1/fasta/hub_GCA_054649055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              72
Total size of examined sequences (bp):           1999847
Total number of identified SSRs:                 27
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	2
5	9
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG	-	-	-								1	1
ATA	-	-	1									1
TGG	-	-	1									1
ATTT	-	1										1
GCGT	-	1										1
AAAAC	1											1
AATAT	1											1
ATAAA	1											1
ATGCG	1											1
TAATT	1											1
TATAA	1											1
TATTT	1											1
TTATA	1											1
TTTTC	1											1
AAACCA	1											1
AAAGCA	1											1
AAATCA	1											1
AGAAAA	1											1
ATTTTT	1											1
GAAAAA	1											1
GCATAA	1											1
GCGGTG	1											1
GTATTT	1											1
TAAACA	2											2
TGATTT	1											1
TTTATC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-								1	1
AAT/ATT	-	-	1									1
ACC/GGT	-	-	1									1
AAAT/ATTT	-	1										1
ACGC/CGTG	-	1										1
AAAAC/GTTTT	1											1
AAAAG/CTTTT	1											1
AAAAT/ATTTT	2											2
AAATT/AATTT	1											1
AATAT/ATATT	3											3
ATCGC/ATGCG	1											1
AAAAAG/CTTTTT	2											2
AAAAAT/ATTTTT	1											1
AAAACC/GGTTTT	1											1
AAAAGC/CTTTTG	1											1
AAAATC/ATTTTG	2											2
AAACAT/ATGTTT	2											2
AAAGAT/ATCTTT	1											1
AAATAC/ATTTGT	1											1
AAGCAT/ATGCTT	1											1
ACCGCC/CGGTGG	1											1
