Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCA_054649015.1/fasta/hub_GCA_054649015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           2029539
Total number of identified SSRs:                 30
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	2
5	11
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CT	-	-	-										1	1
ATT	-	-	1											1
CAT	-	-	1											1
TGG	-	-	1											1
AAAT	-	1												1
TAAT	-	1												1
AATAT	1													1
ATAAA	1													1
ATGCG	1													1
GTTTT	1													1
TAATT	1													1
TATAA	1													1
TATTT	1													1
TTATA	1													1
TTTAA	1													1
TTTAT	1													1
TTTTC	1													1
AAACCA	1													1
AAATCA	1													1
AGCTGG	1													1
CTTTAG	1													1
GAAAAA	1													1
GCGGTG	1													1
GTATTT	1													1
TAAACA	1													1
TGATTT	1													1
TGCTTT	1													1
TTATGC	1													1
TTTATC	1													1
TTTTTC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AG/CT	-	-	-										1	1
AAT/ATT	-	-	1											1
ACC/GGT	-	-	1											1
ATC/ATG	-	-	1											1
AAAT/ATTT	-	1												1
AATT/AATT	-	1												1
AAAAC/GTTTT	1													1
AAAAG/CTTTT	1													1
AAAAT/ATTTT	3													3
AAATT/AATTT	2													2
AATAT/ATATT	3													3
ATCGC/ATGCG	1													1
AAAAAG/CTTTTT	2													2
AAAACC/GGTTTT	1													1
AAAAGC/CTTTTG	1													1
AAAATC/ATTTTG	2													2
AAACAT/ATGTTT	1													1
AAAGAT/ATCTTT	1													1
AAAGCT/AGCTTT	1													1
AAATAC/ATTTGT	1													1
AAGCAT/ATGCTT	1													1
ACCGCC/CGGTGG	1													1
AGCTCC/AGCTGG	1													1
