Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-102/megassr/results/hub_GCA_054648975.1/fasta/hub_GCA_054648975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              111
Total size of examined sequences (bp):           2054757
Total number of identified SSRs:                 27
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	3
5	8
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CT	-	-	-												1	1
ATT	-	-	1													1
TGG	-	-	1													1
ATTT	-	1														1
CGTG	-	1														1
TCAA	-	1														1
AAAAC	1															1
ATAAA	1															1
ATGCG	1															1
ATTAT	1															1
TAATT	1															1
TATTT	1															1
TTATA	1															1
TTTTC	1															1
AAACCA	1															1
AAAGCA	1															1
AAATCA	2															2
AAGATA	1															1
AGAAAA	1															1
CCACCG	1															1
CTTGAA	1															1
GAAAAA	1															1
GCATAA	1															1
TATTTT	1															1
TTCAAG	1															1
TTTATG	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AG/CT	-	-	-												1	1
AAT/ATT	-	-	1													1
ACC/GGT	-	-	1													1
AAAT/ATTT	-	1														1
AATC/ATTG	-	1														1
ACGC/CGTG	-	1														1
AAAAC/GTTTT	1															1
AAAAG/CTTTT	1															1
AAAAT/ATTTT	2															2
AAATT/AATTT	1															1
AATAT/ATATT	2															2
ATCGC/ATGCG	1															1
AAAAAG/CTTTTT	2															2
AAAAAT/ATTTTT	1															1
AAAACC/GGTTTT	1															1
AAAAGC/CTTTTG	1															1
AAAATC/ATTTTG	2															2
AAACAT/ATGTTT	1															1
AAAGAT/ATCTTT	1															1
AACTTG/AAGTTC	2															2
AAGCAT/ATGCTT	1															1
ACCGCC/CGGTGG	1															1
