Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-97/megassr/results/hub_GCA_054648815.1/fasta/hub_GCA_054648815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              53
Total size of examined sequences (bp):           1962696
Total number of identified SSRs:                 27
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
4	2
5	9
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
ATT	-	-	1				1
TGG	-	-	1				1
TTC	-	-				1	1
AAAT	-	1					1
ATTA	-	1					1
AATAT	1						1
ATAAA	1						1
ATGCG	1						1
GTTTT	1						1
TAATT	1						1
TATAA	1						1
TATTT	1						1
TTATA	1						1
TTTAT	1						1
AAACCA	1						1
AAAGCA	1						1
AAATCA	1						1
CTTGAA	1						1
GAAAAA	1						1
TGATTT	1						1
TGCTGG	1						1
TTATGC	1						1
TTCAAG	1						1
TTGGTT	1						1
TTTATC	1						1
TTTATG	1						1
TTTTTC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AAG/CTT	-	-				1	1
AAT/ATT	-	-	1				1
ACC/GGT	-	-	1				1
AAAT/ATTT	-	1					1
AATT/AATT	-	1					1
AAAAC/GTTTT	1						1
AAAAT/ATTTT	3						3
AAATT/AATTT	1						1
AATAT/ATATT	3						3
ATCGC/ATGCG	1						1
AAAAAG/CTTTTT	2						2
AAAACC/GGTTTT	2						2
AAAAGC/CTTTTG	1						1
AAAATC/ATTTTG	2						2
AAACAT/ATGTTT	1						1
AAAGAT/ATCTTT	1						1
AACTTG/AAGTTC	2						2
AAGCAT/ATGCTT	1						1
ACCAGC/CTGGTG	1						1
