Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCA_054648615.1/fasta/hub_GCA_054648615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              96
Total size of examined sequences (bp):           2018647
Total number of identified SSRs:                 29
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	2
5	9
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AG	-	-	-														1	1
ATT	-	-	1															1
CAT	-	-	1															1
TGG	-	-	1															1
AAAT	-	1																1
TAAT	-	1																1
AATAT	1																	1
ATAAA	1																	1
ATGCG	1																	1
GTTTT	1																	1
TAATT	1																	1
TATTT	1																	1
TTAAA	1																	1
TTATA	1																	1
TTTTC	1																	1
AAACCA	1																	1
AAAGCA	1																	1
AAATCA	2																	2
AAGATA	1																	1
ATTTTT	1																	1
CTTTAG	2																	2
GAAAAA	1																	1
GCGGTG	1																	1
GTATTT	1																	1
TTATGC	1																	1
TTTATG	1																	1
TTTTTC	1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AG/CT	-	-	-														1	1
AAT/ATT	-	-	1															1
ACC/GGT	-	-	1															1
ATC/ATG	-	-	1															1
AAAT/ATTT	-	1																1
AATT/AATT	-	1																1
AAAAC/GTTTT	1																	1
AAAAG/CTTTT	1																	1
AAAAT/ATTTT	2																	2
AAATT/AATTT	2																	2
AATAT/ATATT	2																	2
ATCGC/ATGCG	1																	1
AAAAAG/CTTTTT	2																	2
AAAAAT/ATTTTT	1																	1
AAAACC/GGTTTT	1																	1
AAAAGC/CTTTTG	1																	1
AAAATC/ATTTTG	2																	2
AAACAT/ATGTTT	1																	1
AAAGAT/ATCTTT	1																	1
AAAGCT/AGCTTT	2																	2
AAATAC/ATTTGT	1																	1
AAGCAT/ATGCTT	1																	1
ACCGCC/CGGTGG	1																	1
