Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCA_054648515.1/fasta/hub_GCA_054648515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              56
Total size of examined sequences (bp):           1912683
Total number of identified SSRs:                 26
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	2
5	9
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG	-	-	-									1	1
ATT	-	-	1										1
TGG	-	-	1										1
TTC	-	-					1						1
ATTA	-	1											1
ATTT	-	1											1
AAAAC	1												1
AATAT	1												1
ATAAA	1												1
ATGCG	1												1
TAATT	1												1
TATAA	1												1
TATTT	1												1
TTATA	1												1
TTTAT	1												1
AAACCA	1												1
AAAGCA	1												1
AAATCA	1												1
AGAAAA	1												1
CTTGAA	1												1
GAAAAA	1												1
GCATAA	1												1
GTGCTG		1											1
TGATTT	1												1
TTCAAG	1												1
TTTATC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG/CT	-	-	-									1	1
AAG/CTT	-	-					1						1
AAT/ATT	-	-	1										1
ACC/GGT	-	-	1										1
AAAT/ATTT	-	1											1
AATT/AATT	-	1											1
AAAAC/GTTTT	1												1
AAAAT/ATTTT	3												3
AAATT/AATTT	1												1
AATAT/ATATT	3												3
ATCGC/ATGCG	1												1
AAAAAG/CTTTTT	2												2
AAAACC/GGTTTT	1												1
AAAAGC/CTTTTG	1												1
AAAATC/ATTTTG	2												2
AAAGAT/ATCTTT	1												1
AACTTG/AAGTTC	2												2
AAGCAT/ATGCTT	1												1
ACCAGC/CTGGTG		1											1
